Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17■□□□□ 0.31
COL11A1P12107 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL11A1P12107 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17■□□□□ 0.31
COL11A1P12107 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
COL11A1P12107 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.99■□□□□ 0.31
COL11A1P12107 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.99■□□□□ 0.31
COL11A1P12107 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.99■□□□□ 0.31
COL11A1P12107 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.99■□□□□ 0.31
COL11A1P12107 RNA5SP359-201ENST00000364838 113 ntBASIC16.99■□□□□ 0.31
COL11A1P12107 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.99■□□□□ 0.31
COL11A1P12107 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.99■□□□□ 0.31
COL11A1P12107 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 ISCA2P1-201ENST00000425548 448 ntBASIC16.99■□□□□ 0.31
COL11A1P12107 AC078875.1-201ENST00000431907 724 ntBASIC16.99■□□□□ 0.31
COL11A1P12107 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.99■□□□□ 0.31
COL11A1P12107 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC16.99■□□□□ 0.31
COL11A1P12107 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.99■□□□□ 0.31
COL11A1P12107 MIR4722-201ENST00000578292 60 ntBASIC16.99■□□□□ 0.31
COL11A1P12107 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.99■□□□□ 0.31
COL11A1P12107 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
COL11A1P12107 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.99■□□□□ 0.31
COL11A1P12107 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.99■□□□□ 0.31
COL11A1P12107 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL11A1P12107 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.98■□□□□ 0.31
COL11A1P12107 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16.98■□□□□ 0.31
COL11A1P12107 AC092299.1-201ENST00000632679 757 ntBASIC16.98■□□□□ 0.31
COL11A1P12107 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
COL11A1P12107 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 KHSRPP1-201ENST00000427983 1768 ntBASIC16.98■□□□□ 0.31
COL11A1P12107 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.98■□□□□ 0.31
COL11A1P12107 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.98■□□□□ 0.31
COL11A1P12107 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC16.98■□□□□ 0.31
COL11A1P12107 RTN3P1-201ENST00000536295 711 ntBASIC16.98■□□□□ 0.31
COL11A1P12107 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL11A1P12107 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.98■□□□□ 0.31
COL11A1P12107 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
COL11A1P12107 AC007292.2-201ENST00000593524 1812 ntBASIC16.98■□□□□ 0.31
COL11A1P12107 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL11A1P12107 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.97■□□□□ 0.31
COL11A1P12107 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL11A1P12107 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
COL11A1P12107 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL11A1P12107 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.97■□□□□ 0.31
COL11A1P12107 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL11A1P12107 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL11A1P12107 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL11A1P12107 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL11A1P12107 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.97■□□□□ 0.31
COL11A1P12107 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL11A1P12107 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL11A1P12107 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.97■□□□□ 0.31
COL11A1P12107 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms