Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.74□□□□□ -0.05
SEMA3DO95025 MEP1AP4-201ENST00000423244 1087 ntBASIC14.74□□□□□ -0.05
SEMA3DO95025 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.74□□□□□ -0.05
SEMA3DO95025 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.74□□□□□ -0.05
SEMA3DO95025 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.74□□□□□ -0.05
SEMA3DO95025 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.74□□□□□ -0.05
SEMA3DO95025 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.74□□□□□ -0.05
SEMA3DO95025 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.74□□□□□ -0.05
SEMA3DO95025 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.74□□□□□ -0.05
SEMA3DO95025 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.74□□□□□ -0.05
SEMA3DO95025 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.74□□□□□ -0.05
SEMA3DO95025 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.74□□□□□ -0.05
SEMA3DO95025 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
SEMA3DO95025 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.74□□□□□ -0.05
SEMA3DO95025 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SEMA3DO95025 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
SEMA3DO95025 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
SEMA3DO95025 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
SEMA3DO95025 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 AL589987.1-201ENST00000453380 819 ntBASIC14.73□□□□□ -0.05
SEMA3DO95025 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.73□□□□□ -0.05
SEMA3DO95025 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.73□□□□□ -0.05
SEMA3DO95025 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.73□□□□□ -0.05
SEMA3DO95025 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.73□□□□□ -0.05
SEMA3DO95025 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.73□□□□□ -0.05
SEMA3DO95025 RRP7BP-205ENST00000566851 833 ntBASIC14.73□□□□□ -0.05
SEMA3DO95025 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.73□□□□□ -0.05
SEMA3DO95025 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.73□□□□□ -0.05
SEMA3DO95025 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.73□□□□□ -0.05
SEMA3DO95025 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.73□□□□□ -0.05
SEMA3DO95025 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
SEMA3DO95025 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
SEMA3DO95025 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.73□□□□□ -0.05
SEMA3DO95025 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
SEMA3DO95025 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.73□□□□□ -0.05
SEMA3DO95025 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SEMA3DO95025 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.73□□□□□ -0.05
SEMA3DO95025 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.72□□□□□ -0.05
SEMA3DO95025 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.72□□□□□ -0.05
SEMA3DO95025 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
SEMA3DO95025 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
SEMA3DO95025 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.72□□□□□ -0.05
SEMA3DO95025 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SEMA3DO95025 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms