Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC20.91■□□□□ 0.94
NPHP4O75161 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
NPHP4O75161 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC20.91■□□□□ 0.94
NPHP4O75161 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 SURF4-203ENST00000371991 715 ntTSL 3 BASIC20.91■□□□□ 0.94
NPHP4O75161 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC20.91■□□□□ 0.94
NPHP4O75161 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC20.91■□□□□ 0.94
NPHP4O75161 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC20.91■□□□□ 0.94
NPHP4O75161 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC20.91■□□□□ 0.94
NPHP4O75161 AP005212.2-201ENST00000584979 510 ntBASIC20.91■□□□□ 0.94
NPHP4O75161 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC20.91■□□□□ 0.94
NPHP4O75161 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.91■□□□□ 0.94
NPHP4O75161 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
NPHP4O75161 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP4O75161 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
NPHP4O75161 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP4O75161 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
NPHP4O75161 AC080080.1-201ENST00000625121 2420 ntBASIC20.9■□□□□ 0.94
NPHP4O75161 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NPHP4O75161 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP4O75161 PTPA-215ENST00000432124 567 ntTSL 4 BASIC20.9■□□□□ 0.94
NPHP4O75161 SERBP1P2-201ENST00000436888 1164 ntBASIC20.9■□□□□ 0.94
NPHP4O75161 AC003686.1-201ENST00000550956 1034 ntBASIC20.9■□□□□ 0.94
NPHP4O75161 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP4O75161 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
NPHP4O75161 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP4O75161 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
NPHP4O75161 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP4O75161 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP4O75161 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP4O75161 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP4O75161 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP4O75161 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP4O75161 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP4O75161 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
NPHP4O75161 AC021305.1-201ENST00000520656 1514 ntBASIC20.89■□□□□ 0.94
NPHP4O75161 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP4O75161 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP4O75161 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC20.89■□□□□ 0.94
NPHP4O75161 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
NPHP4O75161 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
NPHP4O75161 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC20.89■□□□□ 0.94
NPHP4O75161 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
NPHP4O75161 AC093826.1-201ENST00000508655 993 ntBASIC20.89■□□□□ 0.94
NPHP4O75161 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP4O75161 AC131206.1-201ENST00000538078 1211 ntBASIC20.89■□□□□ 0.94
NPHP4O75161 VPS18-202ENST00000558474 873 ntTSL 3 BASIC20.89■□□□□ 0.94
NPHP4O75161 AC010632.2-201ENST00000588369 1224 ntBASIC20.89■□□□□ 0.94
NPHP4O75161 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC20.89■□□□□ 0.94
NPHP4O75161 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC20.89■□□□□ 0.94
NPHP4O75161 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.94
NPHP4O75161 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
NPHP4O75161 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC20.89■□□□□ 0.93
NPHP4O75161 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP4O75161 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP4O75161 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.89■□□□□ 0.93
NPHP4O75161 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP4O75161 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP4O75161 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP4O75161 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.89■□□□□ 0.93
NPHP4O75161 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
NPHP4O75161 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.89■□□□□ 0.93
NPHP4O75161 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
NPHP4O75161 CTBP2P8-201ENST00000422584 1330 ntBASIC20.89■□□□□ 0.93
NPHP4O75161 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.89■□□□□ 0.93
NPHP4O75161 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP4O75161 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms