Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 NUP58-206ENST00000463407 6360 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 SFMBT2-201ENST00000361972 7922 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 EMD-201ENST00000369835 966 ntTSL 3 BASIC12.4□□□□□ -0.42
HMGB3O15347 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC12.4□□□□□ -0.42
HMGB3O15347 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC12.4□□□□□ -0.42
HMGB3O15347 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 AC006557.2-201ENST00000592985 1240 ntBASIC12.4□□□□□ -0.42
HMGB3O15347 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 VLDLR-203ENST00000382100 9163 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 AC020912.1-201ENST00000638312 5059 ntTSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 IER3-202ENST00000376377 1350 ntBASIC12.4□□□□□ -0.42
HMGB3O15347 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HMGB3O15347 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.42
HMGB3O15347 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.4□□□□□ -0.42
HMGB3O15347 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC12.4□□□□□ -0.43
HMGB3O15347 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.4□□□□□ -0.43
HMGB3O15347 CCDC144A-206ENST00000399273 8686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
HMGB3O15347 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HMGB3O15347 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HMGB3O15347 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HMGB3O15347 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 SH3BP2-201ENST00000356331 9211 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 RBM33-203ENST00000341148 7058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 CACNA1C-204ENST00000347598 6655 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
HMGB3O15347 RGS6-203ENST00000402788 5400 ntTSL 2 BASIC12.39□□□□□ -0.43
HMGB3O15347 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC12.39□□□□□ -0.43
HMGB3O15347 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.39□□□□□ -0.43
HMGB3O15347 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC12.39□□□□□ -0.43
HMGB3O15347 CABIN1-203ENST00000398319 7480 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
HMGB3O15347 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.39□□□□□ -0.43
HMGB3O15347 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
HMGB3O15347 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC12.39□□□□□ -0.43
HMGB3O15347 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.39□□□□□ -0.43
HMGB3O15347 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 PMS2P4-201ENST00000412466 1052 ntBASIC12.39□□□□□ -0.43
HMGB3O15347 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC12.39□□□□□ -0.43
HMGB3O15347 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC12.39□□□□□ -0.43
HMGB3O15347 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
HMGB3O15347 FOSL1P1-201ENST00000511041 816 ntBASIC12.39□□□□□ -0.43
HMGB3O15347 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
HMGB3O15347 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 AL355877.3-201ENST00000622820 899 ntBASIC12.39□□□□□ -0.43
HMGB3O15347 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC12.39□□□□□ -0.43
HMGB3O15347 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms