Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AC104457.1-201ENST00000401024 814 ntBASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AC004461.1-201ENST00000412461 403 ntBASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 POLD2P1-201ENST00000511220 997 ntBASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AC026150.2-201ENST00000564693 1156 ntBASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AC006504.5-208ENST00000588784 2401 ntBASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AC067750.1-201ENST00000608826 6545 ntBASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM49D1C9J1S8 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 Z97205.2-201ENST00000564697 1639 ntBASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 HSPA7-201ENST00000445535 1927 ntBASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 KRT18P58-201ENST00000527480 1120 ntBASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 MIR6069-201ENST00000620069 79 ntBASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AF228730.6-201ENST00000641497 218 ntBASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AL645728.2-202ENST00000641679 227 ntBASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AC084121.3-201ENST00000641716 218 ntBASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AC007787.1-201ENST00000588095 1583 ntBASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms