Protein–RNA interactions for Protein: Q9NTX5

ECHDC1, Ethylmalonyl-CoA decarboxylase, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1Q9NTX5 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
ECHDC1Q9NTX5 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC28.27■■■□□ 2.12
ECHDC1Q9NTX5 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
ECHDC1Q9NTX5 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC28.26■■■□□ 2.12
ECHDC1Q9NTX5 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC28.26■■■□□ 2.11
ECHDC1Q9NTX5 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
ECHDC1Q9NTX5 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC28.26■■■□□ 2.11
ECHDC1Q9NTX5 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC28.26■■■□□ 2.11
ECHDC1Q9NTX5 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
ECHDC1Q9NTX5 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
ECHDC1Q9NTX5 AC131274.2-201ENST00000580697 1507 ntBASIC28.25■■■□□ 2.11
ECHDC1Q9NTX5 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
ECHDC1Q9NTX5 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC28.25■■■□□ 2.11
ECHDC1Q9NTX5 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
ECHDC1Q9NTX5 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
ECHDC1Q9NTX5 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
ECHDC1Q9NTX5 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
ECHDC1Q9NTX5 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
ECHDC1Q9NTX5 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
ECHDC1Q9NTX5 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC28.24■■■□□ 2.11
ECHDC1Q9NTX5 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
ECHDC1Q9NTX5 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
ECHDC1Q9NTX5 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
ECHDC1Q9NTX5 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
ECHDC1Q9NTX5 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
ECHDC1Q9NTX5 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
ECHDC1Q9NTX5 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
ECHDC1Q9NTX5 BX664725.1-201ENST00000438252 379 ntBASIC28.23■■■□□ 2.11
ECHDC1Q9NTX5 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
ECHDC1Q9NTX5 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
ECHDC1Q9NTX5 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC28.23■■■□□ 2.11
ECHDC1Q9NTX5 AC021242.3-201ENST00000607598 1377 ntBASIC28.23■■■□□ 2.11
ECHDC1Q9NTX5 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
ECHDC1Q9NTX5 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ECHDC1Q9NTX5 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
ECHDC1Q9NTX5 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC28.22■■■□□ 2.11
ECHDC1Q9NTX5 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
ECHDC1Q9NTX5 CD37-213ENST00000598095 1598 ntTSL 2 BASIC28.22■■■□□ 2.11
ECHDC1Q9NTX5 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ECHDC1Q9NTX5 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 Z92544.1-202ENST00000571933 1220 ntBASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 AC093323.1-202ENST00000635031 2045 ntBASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 AL022069.1-201ENST00000568025 1636 ntBASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
ECHDC1Q9NTX5 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
ECHDC1Q9NTX5 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC28.2■■■□□ 2.11
ECHDC1Q9NTX5 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.11
ECHDC1Q9NTX5 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.11
ECHDC1Q9NTX5 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
ECHDC1Q9NTX5 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
ECHDC1Q9NTX5 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
ECHDC1Q9NTX5 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC28.2■■■□□ 2.1
ECHDC1Q9NTX5 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC28.19■■■□□ 2.1
ECHDC1Q9NTX5 SENP5-202ENST00000419026 973 ntTSL 3 BASIC28.19■■■□□ 2.1
ECHDC1Q9NTX5 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC28.19■■■□□ 2.1
ECHDC1Q9NTX5 AL035685.1-201ENST00000636663 812 ntBASIC28.19■■■□□ 2.1
ECHDC1Q9NTX5 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
ECHDC1Q9NTX5 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
ECHDC1Q9NTX5 AL161729.1-201ENST00000604104 1402 ntBASIC28.18■■■□□ 2.1
ECHDC1Q9NTX5 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
ECHDC1Q9NTX5 TK2-202ENST00000417693 1046 ntTSL 2 BASIC28.18■■■□□ 2.1
ECHDC1Q9NTX5 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC28.17■■■□□ 2.1
ECHDC1Q9NTX5 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC28.17■■■□□ 2.1
ECHDC1Q9NTX5 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
ECHDC1Q9NTX5 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
ECHDC1Q9NTX5 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
ECHDC1Q9NTX5 AC004812.2-201ENST00000611079 2094 ntBASIC28.17■■■□□ 2.1
ECHDC1Q9NTX5 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
ECHDC1Q9NTX5 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
ECHDC1Q9NTX5 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
ECHDC1Q9NTX5 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC28.16■■■□□ 2.1
ECHDC1Q9NTX5 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC28.16■■■□□ 2.1
ECHDC1Q9NTX5 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
ECHDC1Q9NTX5 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC28.16■■■□□ 2.1
ECHDC1Q9NTX5 AC239859.2-201ENST00000444165 318 ntBASIC28.16■■■□□ 2.1
ECHDC1Q9NTX5 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC28.16■■■□□ 2.1
ECHDC1Q9NTX5 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC28.16■■■□□ 2.1
ECHDC1Q9NTX5 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
ECHDC1Q9NTX5 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC28.15■■■□□ 2.1
ECHDC1Q9NTX5 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
ECHDC1Q9NTX5 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
ECHDC1Q9NTX5 STK32C-205ENST00000456004 607 ntTSL 2 BASIC28.15■■■□□ 2.1
ECHDC1Q9NTX5 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
ECHDC1Q9NTX5 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
ECHDC1Q9NTX5 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
ECHDC1Q9NTX5 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
ECHDC1Q9NTX5 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC28.14■■■□□ 2.1
ECHDC1Q9NTX5 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
ECHDC1Q9NTX5 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.09
ECHDC1Q9NTX5 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
ECHDC1Q9NTX5 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.13■■■□□ 2.09
ECHDC1Q9NTX5 AC004448.1-201ENST00000458332 883 ntBASIC28.13■■■□□ 2.09
ECHDC1Q9NTX5 SHD-204ENST00000599689 1729 ntTSL 5 BASIC28.12■■■□□ 2.09
ECHDC1Q9NTX5 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
ECHDC1Q9NTX5 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms