Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC24.71■■□□□ 1.55
CISHQ9NSE2 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
CISHQ9NSE2 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CISHQ9NSE2 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CISHQ9NSE2 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
CISHQ9NSE2 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
CISHQ9NSE2 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC24.71■■□□□ 1.55
CISHQ9NSE2 AC141586.4-201ENST00000624558 1573 ntBASIC24.71■■□□□ 1.55
CISHQ9NSE2 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.55
CISHQ9NSE2 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.55
CISHQ9NSE2 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.7■■□□□ 1.54
CISHQ9NSE2 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.7■■□□□ 1.54
CISHQ9NSE2 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC24.7■■□□□ 1.54
CISHQ9NSE2 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
CISHQ9NSE2 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.54
CISHQ9NSE2 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CISHQ9NSE2 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.7■■□□□ 1.54
CISHQ9NSE2 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.69■■□□□ 1.54
CISHQ9NSE2 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC24.69■■□□□ 1.54
CISHQ9NSE2 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CISHQ9NSE2 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC24.69■■□□□ 1.54
CISHQ9NSE2 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.69■■□□□ 1.54
CISHQ9NSE2 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CISHQ9NSE2 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
CISHQ9NSE2 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CISHQ9NSE2 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.69■■□□□ 1.54
CISHQ9NSE2 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CISHQ9NSE2 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CISHQ9NSE2 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CISHQ9NSE2 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CISHQ9NSE2 AC131274.2-201ENST00000580697 1507 ntBASIC24.68■■□□□ 1.54
CISHQ9NSE2 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CISHQ9NSE2 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CISHQ9NSE2 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
CISHQ9NSE2 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC24.68■■□□□ 1.54
CISHQ9NSE2 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CISHQ9NSE2 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
CISHQ9NSE2 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
CISHQ9NSE2 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CISHQ9NSE2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CISHQ9NSE2 BX664725.1-201ENST00000438252 379 ntBASIC24.67■■□□□ 1.54
CISHQ9NSE2 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CISHQ9NSE2 AC093323.1-202ENST00000635031 2045 ntBASIC24.67■■□□□ 1.54
CISHQ9NSE2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
CISHQ9NSE2 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
CISHQ9NSE2 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CISHQ9NSE2 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
CISHQ9NSE2 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
CISHQ9NSE2 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CISHQ9NSE2 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
CISHQ9NSE2 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.66■■□□□ 1.54
CISHQ9NSE2 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CISHQ9NSE2 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CISHQ9NSE2 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CISHQ9NSE2 AC021242.3-201ENST00000607598 1377 ntBASIC24.66■■□□□ 1.54
CISHQ9NSE2 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CISHQ9NSE2 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CISHQ9NSE2 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CISHQ9NSE2 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CISHQ9NSE2 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.65■■□□□ 1.54
CISHQ9NSE2 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.65■■□□□ 1.54
CISHQ9NSE2 Z92544.1-202ENST00000571933 1220 ntBASIC24.65■■□□□ 1.54
CISHQ9NSE2 AL022069.1-201ENST00000568025 1636 ntBASIC24.64■■□□□ 1.54
CISHQ9NSE2 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CISHQ9NSE2 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CISHQ9NSE2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
CISHQ9NSE2 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CISHQ9NSE2 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.64■■□□□ 1.54
CISHQ9NSE2 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CISHQ9NSE2 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CISHQ9NSE2 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
CISHQ9NSE2 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.64■■□□□ 1.54
CISHQ9NSE2 AL035685.1-201ENST00000636663 812 ntBASIC24.64■■□□□ 1.54
CISHQ9NSE2 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CISHQ9NSE2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CISHQ9NSE2 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
CISHQ9NSE2 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CISHQ9NSE2 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CISHQ9NSE2 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.63■■□□□ 1.53
CISHQ9NSE2 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.63■■□□□ 1.53
CISHQ9NSE2 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CISHQ9NSE2 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CISHQ9NSE2 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.62■■□□□ 1.53
CISHQ9NSE2 AC004812.2-201ENST00000611079 2094 ntBASIC24.62■■□□□ 1.53
CISHQ9NSE2 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.62■■□□□ 1.53
CISHQ9NSE2 AC239859.2-201ENST00000444165 318 ntBASIC24.62■■□□□ 1.53
CISHQ9NSE2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.62■■□□□ 1.53
CISHQ9NSE2 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CISHQ9NSE2 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.62■■□□□ 1.53
CISHQ9NSE2 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CISHQ9NSE2 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CISHQ9NSE2 AL161729.1-201ENST00000604104 1402 ntBASIC24.61■■□□□ 1.53
CISHQ9NSE2 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CISHQ9NSE2 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CISHQ9NSE2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
CISHQ9NSE2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.61■■□□□ 1.53
CISHQ9NSE2 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.61■■□□□ 1.53
CISHQ9NSE2 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CISHQ9NSE2 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC24.6■■□□□ 1.53
CISHQ9NSE2 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC24.6■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms