Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 SNX5-217ENST00000606557 1087 ntBASIC7.04□□□□□ -1.28
SYNE1Q8NF91 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC7.04□□□□□ -1.28
SYNE1Q8NF91 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 MIR6821-201ENST00000617625 74 ntBASIC7.03□□□□□ -1.28
SYNE1Q8NF91 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SYNE1Q8NF91 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC7.02□□□□□ -1.28
SYNE1Q8NF91 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.28
SYNE1Q8NF91 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 AC106739.1-201ENST00000617035 715 ntBASIC7.02□□□□□ -1.29
SYNE1Q8NF91 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 AL162430.1-201ENST00000480705 870 ntBASIC7.02□□□□□ -1.29
SYNE1Q8NF91 LGR4-203ENST00000480977 492 ntTSL 2 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 PLD4-205ENST00000553861 667 ntTSL 2 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC7.02□□□□□ -1.29
SYNE1Q8NF91 SYT6-210ENST00000641643 1587 ntBASIC7.02□□□□□ -1.29
SYNE1Q8NF91 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 EBPL-204ENST00000378272 766 ntTSL 3 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 AC142086.6-201ENST00000621154 1765 ntBASIC7.02□□□□□ -1.29
SYNE1Q8NF91 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 AC133561.4-201ENST00000566112 224 ntBASIC7.02□□□□□ -1.29
SYNE1Q8NF91 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
SYNE1Q8NF91 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 AP001330.3-201ENST00000520123 633 ntBASIC7.01□□□□□ -1.29
SYNE1Q8NF91 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 AC090877.2-201ENST00000558441 1738 ntBASIC7.01□□□□□ -1.29
SYNE1Q8NF91 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 PBX2P1-201ENST00000493219 1291 ntBASIC7.01□□□□□ -1.29
SYNE1Q8NF91 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms