Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LINC00643Q86TS7 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 AF106564.1-201ENST00000607058 2553 ntBASIC14.55□□□□□ -0.08
LINC00643Q86TS7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
LINC00643Q86TS7 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
LINC00643Q86TS7 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC14.53□□□□□ -0.08
LINC00643Q86TS7 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LINC00643Q86TS7 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LINC00643Q86TS7 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LINC00643Q86TS7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LINC00643Q86TS7 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
LINC00643Q86TS7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC14.52□□□□□ -0.08
LINC00643Q86TS7 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00643Q86TS7 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00643Q86TS7 AL391422.3-201ENST00000603791 2761 ntBASIC14.52□□□□□ -0.09
LINC00643Q86TS7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00643Q86TS7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
LINC00643Q86TS7 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00643Q86TS7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00643Q86TS7 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 AC004812.2-201ENST00000611079 2094 ntBASIC14.51□□□□□ -0.09
LINC00643Q86TS7 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00643Q86TS7 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms