Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
NHLRC1Q6VVB1 AC141586.4-201ENST00000624558 1573 ntBASIC20.75■□□□□ 0.91
NHLRC1Q6VVB1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
NHLRC1Q6VVB1 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.75■□□□□ 0.91
NHLRC1Q6VVB1 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.74■□□□□ 0.91
NHLRC1Q6VVB1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NHLRC1Q6VVB1 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NHLRC1Q6VVB1 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
NHLRC1Q6VVB1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NHLRC1Q6VVB1 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.74■□□□□ 0.91
NHLRC1Q6VVB1 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 MIR4508-201ENST00000584178 70 ntBASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NHLRC1Q6VVB1 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NHLRC1Q6VVB1 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NHLRC1Q6VVB1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NHLRC1Q6VVB1 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
NHLRC1Q6VVB1 AC011551.1-201ENST00000614101 683 ntBASIC20.72■□□□□ 0.91
NHLRC1Q6VVB1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.72■□□□□ 0.91
NHLRC1Q6VVB1 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NHLRC1Q6VVB1 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 KRT18P24-201ENST00000344739 1156 ntBASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NHLRC1Q6VVB1 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.7■□□□□ 0.9
NHLRC1Q6VVB1 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 AC120024.1-201ENST00000562672 995 ntBASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.69■□□□□ 0.9
NHLRC1Q6VVB1 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.68■□□□□ 0.9
NHLRC1Q6VVB1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NHLRC1Q6VVB1 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NHLRC1Q6VVB1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.68■□□□□ 0.9
NHLRC1Q6VVB1 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.68■□□□□ 0.9
NHLRC1Q6VVB1 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NHLRC1Q6VVB1 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NHLRC1Q6VVB1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.68■□□□□ 0.9
NHLRC1Q6VVB1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NHLRC1Q6VVB1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.67■□□□□ 0.9
NHLRC1Q6VVB1 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NHLRC1Q6VVB1 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.66■□□□□ 0.9
NHLRC1Q6VVB1 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NHLRC1Q6VVB1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.66■□□□□ 0.9
NHLRC1Q6VVB1 AC004812.2-201ENST00000611079 2094 ntBASIC20.66■□□□□ 0.9
NHLRC1Q6VVB1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
NHLRC1Q6VVB1 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.65■□□□□ 0.9
NHLRC1Q6VVB1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.65■□□□□ 0.9
NHLRC1Q6VVB1 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NHLRC1Q6VVB1 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.65■□□□□ 0.9
NHLRC1Q6VVB1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
NHLRC1Q6VVB1 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
NHLRC1Q6VVB1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NHLRC1Q6VVB1 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.64■□□□□ 0.9
NHLRC1Q6VVB1 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.64■□□□□ 0.9
NHLRC1Q6VVB1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.64■□□□□ 0.9
NHLRC1Q6VVB1 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NHLRC1Q6VVB1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
NHLRC1Q6VVB1 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.64■□□□□ 0.89
NHLRC1Q6VVB1 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.64■□□□□ 0.89
NHLRC1Q6VVB1 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.64■□□□□ 0.89
NHLRC1Q6VVB1 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms