Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.19■□□□□ 0.66
CSPG4Q6UVK1 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.19■□□□□ 0.66
CSPG4Q6UVK1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.19■□□□□ 0.66
CSPG4Q6UVK1 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CSPG4Q6UVK1 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.19■□□□□ 0.66
CSPG4Q6UVK1 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.19■□□□□ 0.66
CSPG4Q6UVK1 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.19■□□□□ 0.66
CSPG4Q6UVK1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSPG4Q6UVK1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.18■□□□□ 0.66
CSPG4Q6UVK1 AC008764.7-201ENST00000593779 1081 ntBASIC19.18■□□□□ 0.66
CSPG4Q6UVK1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSPG4Q6UVK1 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSPG4Q6UVK1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.18■□□□□ 0.66
CSPG4Q6UVK1 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSPG4Q6UVK1 AC090877.2-201ENST00000558441 1738 ntBASIC19.18■□□□□ 0.66
CSPG4Q6UVK1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CSPG4Q6UVK1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 ERN1-208ENST00000606895 2068 ntBASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.17■□□□□ 0.66
CSPG4Q6UVK1 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CSPG4Q6UVK1 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.16■□□□□ 0.66
CSPG4Q6UVK1 AC092437.1-201ENST00000624794 1048 ntBASIC19.16■□□□□ 0.66
CSPG4Q6UVK1 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CSPG4Q6UVK1 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CSPG4Q6UVK1 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.16■□□□□ 0.66
CSPG4Q6UVK1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.16■□□□□ 0.66
CSPG4Q6UVK1 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CSPG4Q6UVK1 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.15■□□□□ 0.66
CSPG4Q6UVK1 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CSPG4Q6UVK1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.15■□□□□ 0.66
CSPG4Q6UVK1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CSPG4Q6UVK1 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CSPG4Q6UVK1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CSPG4Q6UVK1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CSPG4Q6UVK1 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.14■□□□□ 0.66
CSPG4Q6UVK1 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CSPG4Q6UVK1 AC011298.3-201ENST00000615796 283 ntBASIC19.14■□□□□ 0.66
CSPG4Q6UVK1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
CSPG4Q6UVK1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CSPG4Q6UVK1 AL138724.1-201ENST00000606771 1088 ntBASIC19.14■□□□□ 0.65
CSPG4Q6UVK1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.14■□□□□ 0.65
CSPG4Q6UVK1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.14■□□□□ 0.65
CSPG4Q6UVK1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.14■□□□□ 0.65
CSPG4Q6UVK1 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CSPG4Q6UVK1 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.14■□□□□ 0.65
CSPG4Q6UVK1 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CSPG4Q6UVK1 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.13■□□□□ 0.65
CSPG4Q6UVK1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CSPG4Q6UVK1 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CSPG4Q6UVK1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CSPG4Q6UVK1 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.13■□□□□ 0.65
CSPG4Q6UVK1 AC027682.1-201ENST00000562846 899 ntBASIC19.13■□□□□ 0.65
CSPG4Q6UVK1 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.12■□□□□ 0.65
CSPG4Q6UVK1 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSPG4Q6UVK1 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSPG4Q6UVK1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.11■□□□□ 0.65
CSPG4Q6UVK1 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSPG4Q6UVK1 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CSPG4Q6UVK1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.11■□□□□ 0.65
CSPG4Q6UVK1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.11■□□□□ 0.65
CSPG4Q6UVK1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CSPG4Q6UVK1 AC096887.2-201ENST00000623443 1957 ntBASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.1■□□□□ 0.65
CSPG4Q6UVK1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 AC097639.1-201ENST00000565519 1891 ntBASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms