Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC091305.1-201ENST00000479476 895 ntBASIC22.17■■□□□ 1.14
COL28A1Q2UY09 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.17■■□□□ 1.14
COL28A1Q2UY09 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC22.17■■□□□ 1.14
COL28A1Q2UY09 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC22.17■■□□□ 1.14
COL28A1Q2UY09 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.17■■□□□ 1.14
COL28A1Q2UY09 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL28A1Q2UY09 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL28A1Q2UY09 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL28A1Q2UY09 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
COL28A1Q2UY09 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.16■■□□□ 1.14
COL28A1Q2UY09 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
COL28A1Q2UY09 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
COL28A1Q2UY09 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.15■■□□□ 1.14
COL28A1Q2UY09 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
COL28A1Q2UY09 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL28A1Q2UY09 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.15■■□□□ 1.14
COL28A1Q2UY09 DENND3-207ENST00000518347 850 ntTSL 2 BASIC22.15■■□□□ 1.14
COL28A1Q2UY09 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
COL28A1Q2UY09 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC22.15■■□□□ 1.14
COL28A1Q2UY09 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.15■■□□□ 1.14
COL28A1Q2UY09 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL28A1Q2UY09 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL28A1Q2UY09 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.14■■□□□ 1.14
COL28A1Q2UY09 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.14■■□□□ 1.13
COL28A1Q2UY09 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL28A1Q2UY09 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL28A1Q2UY09 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
COL28A1Q2UY09 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL28A1Q2UY09 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL28A1Q2UY09 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL28A1Q2UY09 AL137784.2-201ENST00000607332 1000 ntBASIC22.13■■□□□ 1.13
COL28A1Q2UY09 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.13■■□□□ 1.13
COL28A1Q2UY09 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL28A1Q2UY09 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL28A1Q2UY09 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COL28A1Q2UY09 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COL28A1Q2UY09 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.12■■□□□ 1.13
COL28A1Q2UY09 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.12■■□□□ 1.13
COL28A1Q2UY09 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.12■■□□□ 1.13
COL28A1Q2UY09 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.12■■□□□ 1.13
COL28A1Q2UY09 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL28A1Q2UY09 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
COL28A1Q2UY09 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL28A1Q2UY09 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC22.11■■□□□ 1.13
COL28A1Q2UY09 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL28A1Q2UY09 ID1-201ENST00000376105 1233 ntBASIC22.11■■□□□ 1.13
COL28A1Q2UY09 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.11■■□□□ 1.13
COL28A1Q2UY09 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL28A1Q2UY09 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL28A1Q2UY09 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL28A1Q2UY09 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL28A1Q2UY09 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL28A1Q2UY09 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL28A1Q2UY09 AC022517.1-201ENST00000592429 346 ntBASIC22.1■■□□□ 1.13
COL28A1Q2UY09 AC011551.1-201ENST00000614101 683 ntBASIC22.1■■□□□ 1.13
COL28A1Q2UY09 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL28A1Q2UY09 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.1■■□□□ 1.13
COL28A1Q2UY09 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.1■■□□□ 1.13
COL28A1Q2UY09 AC092803.2-201ENST00000564287 1899 ntBASIC22.09■■□□□ 1.13
COL28A1Q2UY09 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL28A1Q2UY09 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL28A1Q2UY09 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL28A1Q2UY09 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.09■■□□□ 1.13
COL28A1Q2UY09 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
COL28A1Q2UY09 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL28A1Q2UY09 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL28A1Q2UY09 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL28A1Q2UY09 AC004448.1-201ENST00000458332 883 ntBASIC22.08■■□□□ 1.13
COL28A1Q2UY09 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC22.08■■□□□ 1.13
COL28A1Q2UY09 CA15P2-201ENST00000611168 834 ntBASIC22.08■■□□□ 1.13
COL28A1Q2UY09 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL28A1Q2UY09 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 AC091060.1-201ENST00000623524 1766 ntBASIC22.07■■□□□ 1.12
COL28A1Q2UY09 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
COL28A1Q2UY09 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
COL28A1Q2UY09 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL28A1Q2UY09 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC22.06■■□□□ 1.12
COL28A1Q2UY09 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.06■■□□□ 1.12
COL28A1Q2UY09 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL28A1Q2UY09 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL28A1Q2UY09 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.06■■□□□ 1.12
COL28A1Q2UY09 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL28A1Q2UY09 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.05■■□□□ 1.12
COL28A1Q2UY09 IRS3P-201ENST00000223076 1006 ntBASIC22.05■■□□□ 1.12
COL28A1Q2UY09 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL28A1Q2UY09 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.05■■□□□ 1.12
COL28A1Q2UY09 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL28A1Q2UY09 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC22.05■■□□□ 1.12
COL28A1Q2UY09 CLTA-206ENST00000466396 695 ntTSL 2 BASIC22.05■■□□□ 1.12
COL28A1Q2UY09 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL28A1Q2UY09 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms