Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.73■■□□□ 1.07
MT-ND1P03886 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.72■■□□□ 1.07
MT-ND1P03886 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
MT-ND1P03886 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.72■■□□□ 1.07
MT-ND1P03886 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MT-ND1P03886 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MT-ND1P03886 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
MT-ND1P03886 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MT-ND1P03886 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MT-ND1P03886 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
MT-ND1P03886 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MT-ND1P03886 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
MT-ND1P03886 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MT-ND1P03886 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
MT-ND1P03886 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
MT-ND1P03886 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
MT-ND1P03886 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MT-ND1P03886 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MT-ND1P03886 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MT-ND1P03886 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
MT-ND1P03886 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.7■■□□□ 1.06
MT-ND1P03886 ECEL1P2-201ENST00000461596 1295 ntBASIC21.7■■□□□ 1.06
MT-ND1P03886 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.7■■□□□ 1.06
MT-ND1P03886 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.7■■□□□ 1.06
MT-ND1P03886 AC022413.1-201ENST00000624602 984 ntBASIC21.7■■□□□ 1.06
MT-ND1P03886 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MT-ND1P03886 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.7■■□□□ 1.06
MT-ND1P03886 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
MT-ND1P03886 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
MT-ND1P03886 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND1P03886 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.69■■□□□ 1.06
MT-ND1P03886 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
MT-ND1P03886 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND1P03886 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND1P03886 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND1P03886 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
MT-ND1P03886 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND1P03886 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
MT-ND1P03886 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
MT-ND1P03886 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
MT-ND1P03886 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.68■■□□□ 1.06
MT-ND1P03886 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MT-ND1P03886 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.68■■□□□ 1.06
MT-ND1P03886 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
MT-ND1P03886 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MT-ND1P03886 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MT-ND1P03886 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MT-ND1P03886 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MT-ND1P03886 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
MT-ND1P03886 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND1P03886 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND1P03886 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND1P03886 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND1P03886 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND1P03886 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND1P03886 EP400NL-214ENST00000641289 2402 ntBASIC21.67■■□□□ 1.06
MT-ND1P03886 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.67■■□□□ 1.06
MT-ND1P03886 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND1P03886 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND1P03886 AL117328.2-201ENST00000624617 1940 ntBASIC21.67■■□□□ 1.06
MT-ND1P03886 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MT-ND1P03886 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MT-ND1P03886 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MT-ND1P03886 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
MT-ND1P03886 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.66■■□□□ 1.06
MT-ND1P03886 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
MT-ND1P03886 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MT-ND1P03886 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
MT-ND1P03886 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MT-ND1P03886 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MT-ND1P03886 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MT-ND1P03886 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MT-ND1P03886 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.65■■□□□ 1.06
MT-ND1P03886 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.65■■□□□ 1.06
MT-ND1P03886 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.65■■□□□ 1.06
MT-ND1P03886 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
MT-ND1P03886 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MT-ND1P03886 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
MT-ND1P03886 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MT-ND1P03886 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.64■■□□□ 1.05
MT-ND1P03886 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
MT-ND1P03886 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.64■■□□□ 1.05
MT-ND1P03886 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MT-ND1P03886 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.63■■□□□ 1.05
MT-ND1P03886 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
MT-ND1P03886 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
MT-ND1P03886 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.63■■□□□ 1.05
MT-ND1P03886 RP9P-202ENST00000450133 1212 ntBASIC21.63■■□□□ 1.05
MT-ND1P03886 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.63■■□□□ 1.05
MT-ND1P03886 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
MT-ND1P03886 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MT-ND1P03886 AC233723.2-201ENST00000623798 2106 ntBASIC21.62■■□□□ 1.05
MT-ND1P03886 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
MT-ND1P03886 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MT-ND1P03886 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
MT-ND1P03886 MIR4449-201ENST00000578365 66 ntBASIC21.62■■□□□ 1.05
MT-ND1P03886 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.62■■□□□ 1.05
MT-ND1P03886 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.62■■□□□ 1.05
MT-ND1P03886 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MT-ND1P03886 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms