Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLPTM1O96005 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.64■■□□□ 1.06
CLPTM1O96005 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.64■■□□□ 1.06
CLPTM1O96005 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.64■■□□□ 1.06
CLPTM1O96005 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLPTM1O96005 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.64■■□□□ 1.05
CLPTM1O96005 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
CLPTM1O96005 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CLPTM1O96005 LINC00526-201ENST00000581067 1875 ntBASIC21.64■■□□□ 1.05
CLPTM1O96005 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CLPTM1O96005 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.64■■□□□ 1.05
CLPTM1O96005 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CLPTM1O96005 AC127496.7-201ENST00000625110 1798 ntBASIC21.64■■□□□ 1.05
CLPTM1O96005 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLPTM1O96005 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLPTM1O96005 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CLPTM1O96005 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CLPTM1O96005 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.63■■□□□ 1.05
CLPTM1O96005 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CLPTM1O96005 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLPTM1O96005 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLPTM1O96005 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.63■■□□□ 1.05
CLPTM1O96005 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLPTM1O96005 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLPTM1O96005 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLPTM1O96005 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.62■■□□□ 1.05
CLPTM1O96005 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLPTM1O96005 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLPTM1O96005 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CLPTM1O96005 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLPTM1O96005 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.62■■□□□ 1.05
CLPTM1O96005 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLPTM1O96005 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.62■■□□□ 1.05
CLPTM1O96005 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLPTM1O96005 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.62■■□□□ 1.05
CLPTM1O96005 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLPTM1O96005 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.62■■□□□ 1.05
CLPTM1O96005 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLPTM1O96005 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
CLPTM1O96005 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLPTM1O96005 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.61■■□□□ 1.05
CLPTM1O96005 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLPTM1O96005 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLPTM1O96005 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.61■■□□□ 1.05
CLPTM1O96005 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLPTM1O96005 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLPTM1O96005 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.6■■□□□ 1.05
CLPTM1O96005 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.6■■□□□ 1.05
CLPTM1O96005 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLPTM1O96005 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
CLPTM1O96005 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.59■■□□□ 1.05
CLPTM1O96005 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLPTM1O96005 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLPTM1O96005 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.59■■□□□ 1.05
CLPTM1O96005 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.59■■□□□ 1.05
CLPTM1O96005 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLPTM1O96005 MIR219A2-201ENST00000608502 1504 ntBASIC21.59■■□□□ 1.05
CLPTM1O96005 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLPTM1O96005 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLPTM1O96005 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.58■■□□□ 1.05
CLPTM1O96005 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLPTM1O96005 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLPTM1O96005 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLPTM1O96005 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLPTM1O96005 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLPTM1O96005 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLPTM1O96005 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLPTM1O96005 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLPTM1O96005 AC148477.6-201ENST00000623746 465 ntBASIC21.57■■□□□ 1.04
CLPTM1O96005 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLPTM1O96005 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLPTM1O96005 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLPTM1O96005 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLPTM1O96005 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.57■■□□□ 1.04
CLPTM1O96005 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLPTM1O96005 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLPTM1O96005 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLPTM1O96005 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.56■■□□□ 1.04
CLPTM1O96005 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLPTM1O96005 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLPTM1O96005 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLPTM1O96005 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
CLPTM1O96005 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.56■■□□□ 1.04
CLPTM1O96005 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLPTM1O96005 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms