Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SOX1O00570 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.1■■□□□ 1.61
SOX1O00570 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.1■■□□□ 1.61
SOX1O00570 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SOX1O00570 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SOX1O00570 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SOX1O00570 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SOX1O00570 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC25.09■■□□□ 1.61
SOX1O00570 CDCA4P2-201ENST00000441182 718 ntBASIC25.09■■□□□ 1.61
SOX1O00570 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SOX1O00570 TSPY20P-201ENST00000450910 630 ntBASIC25.09■■□□□ 1.61
SOX1O00570 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SOX1O00570 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.09■■□□□ 1.61
SOX1O00570 MIR6084-201ENST00000622012 110 ntBASIC25.09■■□□□ 1.61
SOX1O00570 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC25.09■■□□□ 1.61
SOX1O00570 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
SOX1O00570 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC25.09■■□□□ 1.61
SOX1O00570 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC25.09■■□□□ 1.61
SOX1O00570 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SOX1O00570 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SOX1O00570 MAP2K4P1-201ENST00000438453 1195 ntBASIC25.08■■□□□ 1.61
SOX1O00570 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC25.08■■□□□ 1.61
SOX1O00570 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.08■■□□□ 1.61
SOX1O00570 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC25.08■■□□□ 1.61
SOX1O00570 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.08■■□□□ 1.61
SOX1O00570 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.6
SOX1O00570 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC25.07■■□□□ 1.6
SOX1O00570 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SOX1O00570 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
SOX1O00570 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.07■■□□□ 1.6
SOX1O00570 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC25.07■■□□□ 1.6
SOX1O00570 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
SOX1O00570 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
SOX1O00570 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
SOX1O00570 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
SOX1O00570 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SOX1O00570 AC005703.6-201ENST00000623265 1329 ntBASIC25.07■■□□□ 1.6
SOX1O00570 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.06■■□□□ 1.6
SOX1O00570 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.06■■□□□ 1.6
SOX1O00570 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
SOX1O00570 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC25.06■■□□□ 1.6
SOX1O00570 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC25.06■■□□□ 1.6
SOX1O00570 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
SOX1O00570 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.06■■□□□ 1.6
SOX1O00570 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SOX1O00570 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SOX1O00570 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC25.05■■□□□ 1.6
SOX1O00570 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
SOX1O00570 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
SOX1O00570 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC25.05■■□□□ 1.6
SOX1O00570 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
SOX1O00570 AC073111.5-205ENST00000641717 521 ntBASIC25.05■■□□□ 1.6
SOX1O00570 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
SOX1O00570 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SOX1O00570 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC25.04■■□□□ 1.6
SOX1O00570 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SOX1O00570 PPP1R14BP3-201ENST00000509033 445 ntBASIC25.04■■□□□ 1.6
SOX1O00570 CD99P1-205ENST00000527459 561 ntBASIC25.04■■□□□ 1.6
SOX1O00570 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC25.04■■□□□ 1.6
SOX1O00570 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SOX1O00570 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC25.04■■□□□ 1.6
SOX1O00570 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
SOX1O00570 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.04■■□□□ 1.6
SOX1O00570 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.03■■□□□ 1.6
SOX1O00570 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SOX1O00570 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SOX1O00570 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
SOX1O00570 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC25.03■■□□□ 1.6
SOX1O00570 KRT18P14-201ENST00000534205 1250 ntBASIC25.03■■□□□ 1.6
SOX1O00570 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
SOX1O00570 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SOX1O00570 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
SOX1O00570 TSPY26P-201ENST00000476365 1326 ntBASIC25.03■■□□□ 1.6
SOX1O00570 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.02■■□□□ 1.6
SOX1O00570 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SOX1O00570 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SOX1O00570 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC25.02■■□□□ 1.6
SOX1O00570 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC25.02■■□□□ 1.6
SOX1O00570 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC25.02■■□□□ 1.6
SOX1O00570 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.02■■□□□ 1.6
SOX1O00570 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC25.02■■□□□ 1.6
SOX1O00570 AL358852.1-201ENST00000623174 1268 ntBASIC25.02■■□□□ 1.6
SOX1O00570 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SOX1O00570 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SOX1O00570 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SOX1O00570 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
SOX1O00570 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SOX1O00570 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SOX1O00570 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
SOX1O00570 ARL16-209ENST00000573715 763 ntTSL 3 BASIC25.01■■□□□ 1.59
SOX1O00570 ARL16-211ENST00000576135 694 ntTSL 3 BASIC25.01■■□□□ 1.59
SOX1O00570 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SOX1O00570 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SOX1O00570 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25■■□□□ 1.59
SOX1O00570 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SOX1O00570 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SOX1O00570 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
SOX1O00570 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC25■■□□□ 1.59
SOX1O00570 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC25■■□□□ 1.59
SOX1O00570 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms