Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
COL6A5A8TX70 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A5A8TX70 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL6A5A8TX70 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A5A8TX70 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.35■□□□□ 0.53
COL6A5A8TX70 CCDC92B-201ENST00000575506 885 ntBASIC18.35■□□□□ 0.53
COL6A5A8TX70 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A5A8TX70 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A5A8TX70 AL449106.1-201ENST00000608517 1980 ntBASIC18.35■□□□□ 0.53
COL6A5A8TX70 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
COL6A5A8TX70 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.35■□□□□ 0.53
COL6A5A8TX70 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A5A8TX70 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A5A8TX70 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A5A8TX70 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.34■□□□□ 0.53
COL6A5A8TX70 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A5A8TX70 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.34■□□□□ 0.53
COL6A5A8TX70 CD99P1-205ENST00000527459 561 ntBASIC18.34■□□□□ 0.53
COL6A5A8TX70 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.34■□□□□ 0.53
COL6A5A8TX70 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.33■□□□□ 0.53
COL6A5A8TX70 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A5A8TX70 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A5A8TX70 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A5A8TX70 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A5A8TX70 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A5A8TX70 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.33■□□□□ 0.53
COL6A5A8TX70 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.33■□□□□ 0.53
COL6A5A8TX70 AC142086.2-201ENST00000569753 217 ntBASIC18.33■□□□□ 0.53
COL6A5A8TX70 AC092171.4-201ENST00000609130 632 ntBASIC18.33■□□□□ 0.53
COL6A5A8TX70 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC18.33■□□□□ 0.52
COL6A5A8TX70 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A5A8TX70 SSSCA1-AS1-201ENST00000567594 614 ntBASIC18.33■□□□□ 0.52
COL6A5A8TX70 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.33■□□□□ 0.52
COL6A5A8TX70 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A5A8TX70 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A5A8TX70 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.32■□□□□ 0.52
COL6A5A8TX70 AC008687.6-201ENST00000596318 630 ntBASIC18.32■□□□□ 0.52
COL6A5A8TX70 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A5A8TX70 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A5A8TX70 AC099791.2-201ENST00000605725 427 ntBASIC18.32■□□□□ 0.52
COL6A5A8TX70 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A5A8TX70 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A5A8TX70 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.31■□□□□ 0.52
COL6A5A8TX70 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.31■□□□□ 0.52
COL6A5A8TX70 AC006015.1-201ENST00000429970 570 ntBASIC18.31■□□□□ 0.52
COL6A5A8TX70 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A5A8TX70 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A5A8TX70 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A5A8TX70 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A5A8TX70 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A5A8TX70 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A5A8TX70 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.31■□□□□ 0.52
COL6A5A8TX70 BX842568.3-201ENST00000418104 571 ntBASIC18.31■□□□□ 0.52
COL6A5A8TX70 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.31■□□□□ 0.52
COL6A5A8TX70 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
COL6A5A8TX70 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL6A5A8TX70 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A5A8TX70 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL6A5A8TX70 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A5A8TX70 NCF1B-203ENST00000435988 1254 ntBASIC18.3■□□□□ 0.52
COL6A5A8TX70 CROCCP5-201ENST00000436658 830 ntBASIC18.3■□□□□ 0.52
COL6A5A8TX70 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A5A8TX70 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.3■□□□□ 0.52
COL6A5A8TX70 KRT18P14-201ENST00000534205 1250 ntBASIC18.3■□□□□ 0.52
COL6A5A8TX70 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A5A8TX70 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A5A8TX70 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A5A8TX70 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A5A8TX70 AL355802.2-201ENST00000402069 882 ntBASIC18.29■□□□□ 0.52
COL6A5A8TX70 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.29■□□□□ 0.52
COL6A5A8TX70 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A5A8TX70 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A5A8TX70 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL6A5A8TX70 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
COL6A5A8TX70 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A5A8TX70 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A5A8TX70 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A5A8TX70 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A5A8TX70 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.29■□□□□ 0.52
COL6A5A8TX70 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A5A8TX70 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A5A8TX70 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A5A8TX70 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A5A8TX70 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A5A8TX70 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A5A8TX70 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A5A8TX70 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A5A8TX70 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A5A8TX70 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A5A8TX70 AL499627.2-201ENST00000606283 725 ntBASIC18.28■□□□□ 0.52
COL6A5A8TX70 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.28■□□□□ 0.52
COL6A5A8TX70 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.27■□□□□ 0.52
COL6A5A8TX70 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A5A8TX70 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.27■□□□□ 0.52
COL6A5A8TX70 C17orf82-201ENST00000623772 1530 ntBASIC18.27■□□□□ 0.52
COL6A5A8TX70 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL6A5A8TX70 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL6A5A8TX70 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
COL6A5A8TX70 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.27■□□□□ 0.51
COL6A5A8TX70 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms