Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHISA3A0PJX4 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHISA3A0PJX4 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.22■□□□□ 0.83
SHISA3A0PJX4 AL157400.5-201ENST00000507624 621 ntBASIC20.22■□□□□ 0.83
SHISA3A0PJX4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHISA3A0PJX4 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHISA3A0PJX4 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHISA3A0PJX4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SHISA3A0PJX4 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHISA3A0PJX4 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHISA3A0PJX4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHISA3A0PJX4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHISA3A0PJX4 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHISA3A0PJX4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.21■□□□□ 0.83
SHISA3A0PJX4 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.21■□□□□ 0.83
SHISA3A0PJX4 AC025884.2-201ENST00000553429 711 ntBASIC20.21■□□□□ 0.83
SHISA3A0PJX4 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHISA3A0PJX4 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
SHISA3A0PJX4 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHISA3A0PJX4 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHISA3A0PJX4 DUSP8P3-201ENST00000399571 1760 ntBASIC20.2■□□□□ 0.82
SHISA3A0PJX4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHISA3A0PJX4 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHISA3A0PJX4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SHISA3A0PJX4 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHISA3A0PJX4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHISA3A0PJX4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SHISA3A0PJX4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
SHISA3A0PJX4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHISA3A0PJX4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHISA3A0PJX4 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHISA3A0PJX4 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.19■□□□□ 0.82
SHISA3A0PJX4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHISA3A0PJX4 LINC00526-201ENST00000581067 1875 ntBASIC20.18■□□□□ 0.82
SHISA3A0PJX4 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHISA3A0PJX4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.16■□□□□ 0.82
SHISA3A0PJX4 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 GUSBP5-202ENST00000510805 1989 ntBASIC20.15■□□□□ 0.82
SHISA3A0PJX4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHISA3A0PJX4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHISA3A0PJX4 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHISA3A0PJX4 AC092068.2-201ENST00000590491 1708 ntBASIC20.14■□□□□ 0.81
SHISA3A0PJX4 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHISA3A0PJX4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHISA3A0PJX4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHISA3A0PJX4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.14■□□□□ 0.81
SHISA3A0PJX4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 158.5 ms