Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 DUSP8P3-201ENST00000399571 1760 ntBASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TRAV1-2A0A0B4J238 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
TRAV1-2A0A0B4J238 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV1-2A0A0B4J238 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV1-2A0A0B4J238 AC092068.2-201ENST00000590491 1708 ntBASIC20.11■□□□□ 0.81
TRAV1-2A0A0B4J238 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
TRAV1-2A0A0B4J238 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.11■□□□□ 0.81
TRAV1-2A0A0B4J238 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV1-2A0A0B4J238 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 LINC00565-201ENST00000562710 2331 ntBASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-2A0A0B4J238 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 SMPD5-203ENST00000639008 1464 ntBASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-2A0A0B4J238 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
TRAV1-2A0A0B4J238 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.08■□□□□ 0.81
TRAV1-2A0A0B4J238 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.08■□□□□ 0.8
TRAV1-2A0A0B4J238 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRAV1-2A0A0B4J238 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.8
TRAV1-2A0A0B4J238 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRAV1-2A0A0B4J238 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 CR559946.2-201ENST00000623684 991 ntBASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-2A0A0B4J238 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV1-2A0A0B4J238 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRAV1-2A0A0B4J238 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV1-2A0A0B4J238 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV1-2A0A0B4J238 KRT18P10-201ENST00000388836 1287 ntBASIC20.05■□□□□ 0.8
TRAV1-2A0A0B4J238 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV1-2A0A0B4J238 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV1-2A0A0B4J238 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV1-2A0A0B4J238 LINC00526-201ENST00000581067 1875 ntBASIC20.05■□□□□ 0.8
TRAV1-2A0A0B4J238 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TRAV1-2A0A0B4J238 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 C1orf229-201ENST00000623686 2258 ntBASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 AC127496.7-201ENST00000625110 1798 ntBASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAV1-2A0A0B4J238 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms