Protein–RNA interactions for Protein: Q9NUP9

LIN7C, Protein lin-7 homolog C, humanhuman

Known RBP Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN7CQ9NUP9 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 AC069120.2-201ENST00000524091 540 ntBASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 RN7SL828P-201ENST00000607615 303 ntBASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 AC087386.2-201ENST00000623212 4637 ntBASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 AC007191.1-201ENST00000623179 2995 ntBASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 GRK6P1-201ENST00000400595 1711 ntBASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC12.82□□□□□ -0.36
LIN7CQ9NUP9 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 AC084364.1-201ENST00000551967 1556 ntBASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 AL607033.1-201ENST00000623900 1599 ntBASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 RFPL4AP1-201ENST00000530883 850 ntBASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.81□□□□□ -0.36
LIN7CQ9NUP9 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 CETN4P-206ENST00000642099 2168 ntBASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
LIN7CQ9NUP9 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms