Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 AC104457.1-201ENST00000401024 814 ntBASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 AC015922.1-201ENST00000421102 1152 ntBASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 AC025048.3-201ENST00000590609 569 ntBASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 AC005702.4-201ENST00000618393 416 ntBASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
POLR2J3Q9H1A7 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 AC074338.1-201ENST00000416825 156 ntBASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 AC254562.1-201ENST00000417586 456 ntBASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 AC012508.2-201ENST00000567613 1472 ntBASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
POLR2J3Q9H1A7 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 REXO1L2P-201ENST00000425429 2069 ntBASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 AC015656.1-201ENST00000624209 3578 ntBASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
POLR2J3Q9H1A7 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms