Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
COL12A1Q99715 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 AP000358.1-201ENST00000456260 156 ntBASIC13.07□□□□□ -0.32
COL12A1Q99715 RBM4-207ENST00000506523 654 ntTSL 3 BASIC13.07□□□□□ -0.32
COL12A1Q99715 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC13.07□□□□□ -0.32
COL12A1Q99715 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 AC005962.1-201ENST00000584100 773 ntBASIC13.07□□□□□ -0.32
COL12A1Q99715 AC140113.1-201ENST00000603467 169 ntBASIC13.07□□□□□ -0.32
COL12A1Q99715 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 NOC2LP2-201ENST00000407594 1944 ntBASIC13.07□□□□□ -0.32
COL12A1Q99715 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.07□□□□□ -0.32
COL12A1Q99715 AC106827.1-201ENST00000366454 431 ntBASIC13.07□□□□□ -0.32
COL12A1Q99715 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.07□□□□□ -0.32
COL12A1Q99715 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.07□□□□□ -0.32
COL12A1Q99715 BANF1P3-201ENST00000412556 261 ntBASIC13.07□□□□□ -0.32
COL12A1Q99715 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.07□□□□□ -0.32
COL12A1Q99715 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 NAV1-210ENST00000593583 726 ntBASIC13.07□□□□□ -0.32
COL12A1Q99715 AC138696.2-201ENST00000607376 223 ntBASIC13.07□□□□□ -0.32
COL12A1Q99715 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.06□□□□□ -0.32
COL12A1Q99715 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC13.06□□□□□ -0.32
COL12A1Q99715 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 FAU-201ENST00000279259 461 ntTSL 2 BASIC13.06□□□□□ -0.32
COL12A1Q99715 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL12A1Q99715 BX088651.3-201ENST00000418155 352 ntBASIC13.06□□□□□ -0.32
COL12A1Q99715 AL807761.2-201ENST00000422849 729 ntBASIC13.06□□□□□ -0.32
COL12A1Q99715 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC13.06□□□□□ -0.32
COL12A1Q99715 AL929302.1-201ENST00000426556 871 ntBASIC13.06□□□□□ -0.32
COL12A1Q99715 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC13.06□□□□□ -0.32
COL12A1Q99715 DUX4L47-201ENST00000566374 394 ntBASIC13.06□□□□□ -0.32
COL12A1Q99715 MIR3180-2-201ENST00000581748 88 ntBASIC13.06□□□□□ -0.32
COL12A1Q99715 AC087392.5-201ENST00000612517 489 ntBASIC13.06□□□□□ -0.32
COL12A1Q99715 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.06□□□□□ -0.32
COL12A1Q99715 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.06□□□□□ -0.32
COL12A1Q99715 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
COL12A1Q99715 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC13.06□□□□□ -0.32
COL12A1Q99715 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
COL12A1Q99715 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.06□□□□□ -0.32
COL12A1Q99715 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
COL12A1Q99715 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.06□□□□□ -0.32
COL12A1Q99715 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13.06□□□□□ -0.32
COL12A1Q99715 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
COL12A1Q99715 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
COL12A1Q99715 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC13.06□□□□□ -0.32
COL12A1Q99715 CHCHD2P9-201ENST00000461726 456 ntBASIC13.06□□□□□ -0.32
COL12A1Q99715 ABHD17AP9-201ENST00000561925 548 ntBASIC13.06□□□□□ -0.32
COL12A1Q99715 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC13.06□□□□□ -0.32
COL12A1Q99715 AC008972.2-201ENST00000606587 494 ntBASIC13.06□□□□□ -0.32
COL12A1Q99715 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.06□□□□□ -0.32
COL12A1Q99715 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL12A1Q99715 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.05□□□□□ -0.32
COL12A1Q99715 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.05□□□□□ -0.32
COL12A1Q99715 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC13.05□□□□□ -0.32
COL12A1Q99715 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL12A1Q99715 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms