Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 AC135586.1-201ENST00000539323 574 ntBASIC14.56□□□□□ -0.08
COL21A1Q96P44 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 AL096865.1-201ENST00000606796 927 ntBASIC14.56□□□□□ -0.08
COL21A1Q96P44 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 CICP4-201ENST00000447359 2812 ntBASIC14.56□□□□□ -0.08
COL21A1Q96P44 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.56□□□□□ -0.08
COL21A1Q96P44 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL21A1Q96P44 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 MRPS18AP1-201ENST00000414458 589 ntBASIC14.55□□□□□ -0.08
COL21A1Q96P44 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 AC114501.2-201ENST00000439631 535 ntBASIC14.55□□□□□ -0.08
COL21A1Q96P44 BCRP1-201ENST00000444246 691 ntBASIC14.55□□□□□ -0.08
COL21A1Q96P44 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 SPCS2P1-201ENST00000561636 679 ntBASIC14.55□□□□□ -0.08
COL21A1Q96P44 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 AC008738.7-201ENST00000609744 511 ntBASIC14.55□□□□□ -0.08
COL21A1Q96P44 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.55□□□□□ -0.08
COL21A1Q96P44 AC139749.1-202ENST00000617529 3139 ntBASIC14.55□□□□□ -0.08
COL21A1Q96P44 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL21A1Q96P44 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms