Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC004461.1-201ENST00000412461 403 ntBASIC16.6■□□□□ 0.25
CCDC42Q96M95 GPS2P2-201ENST00000430745 888 ntBASIC16.6■□□□□ 0.25
CCDC42Q96M95 SPDYE14P-201ENST00000442619 822 ntBASIC16.6■□□□□ 0.25
CCDC42Q96M95 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 AC093520.2-201ENST00000561830 333 ntBASIC16.6■□□□□ 0.25
CCDC42Q96M95 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 AL645728.2-202ENST00000641679 227 ntBASIC16.6■□□□□ 0.25
CCDC42Q96M95 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 BX640514.1-201ENST00000583223 1918 ntBASIC16.6■□□□□ 0.25
CCDC42Q96M95 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 Z97205.2-201ENST00000564697 1639 ntBASIC16.59■□□□□ 0.25
CCDC42Q96M95 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 MIR574-201ENST00000385209 96 ntBASIC16.59■□□□□ 0.25
CCDC42Q96M95 KRT18P64-201ENST00000434946 1219 ntBASIC16.59■□□□□ 0.25
CCDC42Q96M95 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.59■□□□□ 0.25
CCDC42Q96M95 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC42Q96M95 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC42Q96M95 AC113367.3-201ENST00000508316 1912 ntBASIC16.58■□□□□ 0.25
CCDC42Q96M95 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.58■□□□□ 0.25
CCDC42Q96M95 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
CCDC42Q96M95 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC42Q96M95 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
CCDC42Q96M95 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.58■□□□□ 0.25
CCDC42Q96M95 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC42Q96M95 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC42Q96M95 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 MIR4453-201ENST00000584019 89 ntBASIC16.58■□□□□ 0.24
CCDC42Q96M95 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 AC025181.2-201ENST00000606994 802 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms