Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 Z97205.2-201ENST00000564697 1639 ntBASIC14.78□□□□□ -0.04
VMP1Q96GC9 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 SPTLC1P1-201ENST00000447199 261 ntBASIC14.78□□□□□ -0.04
VMP1Q96GC9 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 AC104794.3-201ENST00000566840 1248 ntBASIC14.78□□□□□ -0.04
VMP1Q96GC9 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 AC004461.2-201ENST00000629517 803 ntBASIC14.78□□□□□ -0.04
VMP1Q96GC9 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VMP1Q96GC9 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.78□□□□□ -0.04
VMP1Q96GC9 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.77□□□□□ -0.04
VMP1Q96GC9 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.77□□□□□ -0.04
VMP1Q96GC9 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
VMP1Q96GC9 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.77□□□□□ -0.04
VMP1Q96GC9 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.77□□□□□ -0.04
VMP1Q96GC9 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.77□□□□□ -0.04
VMP1Q96GC9 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.77□□□□□ -0.04
VMP1Q96GC9 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VMP1Q96GC9 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.77□□□□□ -0.05
VMP1Q96GC9 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.77□□□□□ -0.05
VMP1Q96GC9 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VMP1Q96GC9 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
VMP1Q96GC9 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms