Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 AL513523.2-202ENST00000427283 2040 ntBASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 AL162726.2-201ENST00000438986 1017 ntBASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 RPL13AP25-201ENST00000484130 612 ntBASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 AC010319.3-201ENST00000597028 470 ntBASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 CU634019.7-201ENST00000624153 1185 ntBASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 FP236241.2-201ENST00000624906 1185 ntBASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 AC011477.6-201ENST00000604980 1927 ntBASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 AC092384.3-202ENST00000564646 2873 ntBASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 AC134915.1-201ENST00000426461 574 ntBASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 AC097359.3-201ENST00000603982 1210 ntBASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLIP3Q96DZ5 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 AC073869.1-201ENST00000415574 2762 ntBASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 AL359183.1-201ENST00000623796 2132 ntBASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 AC007191.1-201ENST00000623179 2995 ntBASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLIP3Q96DZ5 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms