Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 AL359711.2-201ENST00000563105 872 ntBASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 AL645728.2-202ENST00000641679 227 ntBASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP4CQ96CF2 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 AC099063.4-201ENST00000641099 1602 ntBASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 TTTY23B-201ENST00000442790 549 ntBASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 VDAC1P7-201ENST00000462417 847 ntBASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 AC099568.2-201ENST00000609194 695 ntBASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 AL008721.1-201ENST00000609964 604 ntBASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 OR2I1P-210ENST00000642037 4691 ntBASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 AL121723.1-201ENST00000445194 1519 ntBASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP4CQ96CF2 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 CR383656.12-201ENST00000549567 513 ntBASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms