Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.46■□□□□ 0.39
ERCC4Q92889 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ERCC4Q92889 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.46■□□□□ 0.39
ERCC4Q92889 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.46■□□□□ 0.39
ERCC4Q92889 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
ERCC4Q92889 AC009093.7-201ENST00000623853 1223 ntBASIC17.46■□□□□ 0.39
ERCC4Q92889 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ERCC4Q92889 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ERCC4Q92889 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
ERCC4Q92889 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ERCC4Q92889 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC17.46■□□□□ 0.39
ERCC4Q92889 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC17.46■□□□□ 0.39
ERCC4Q92889 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.46■□□□□ 0.39
ERCC4Q92889 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ERCC4Q92889 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.46■□□□□ 0.39
ERCC4Q92889 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ERCC4Q92889 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
ERCC4Q92889 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ERCC4Q92889 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ERCC4Q92889 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.38
ERCC4Q92889 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.46■□□□□ 0.38
ERCC4Q92889 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
ERCC4Q92889 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
ERCC4Q92889 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
ERCC4Q92889 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 AC005840.4-201ENST00000541242 2494 ntBASIC17.45■□□□□ 0.38
ERCC4Q92889 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.45■□□□□ 0.38
ERCC4Q92889 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.45■□□□□ 0.38
ERCC4Q92889 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
ERCC4Q92889 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.45■□□□□ 0.38
ERCC4Q92889 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 RPSAP43-201ENST00000402237 625 ntBASIC17.45■□□□□ 0.38
ERCC4Q92889 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.45■□□□□ 0.38
ERCC4Q92889 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
ERCC4Q92889 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
ERCC4Q92889 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.45■□□□□ 0.38
ERCC4Q92889 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.45■□□□□ 0.38
ERCC4Q92889 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.45■□□□□ 0.38
ERCC4Q92889 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.45■□□□□ 0.38
ERCC4Q92889 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
ERCC4Q92889 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC17.45■□□□□ 0.38
ERCC4Q92889 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
ERCC4Q92889 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ERCC4Q92889 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
ERCC4Q92889 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
ERCC4Q92889 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.44■□□□□ 0.38
ERCC4Q92889 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.44■□□□□ 0.38
ERCC4Q92889 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
ERCC4Q92889 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.44■□□□□ 0.38
ERCC4Q92889 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
ERCC4Q92889 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ERCC4Q92889 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ERCC4Q92889 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
ERCC4Q92889 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
ERCC4Q92889 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.44■□□□□ 0.38
ERCC4Q92889 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
ERCC4Q92889 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ERCC4Q92889 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.44■□□□□ 0.38
ERCC4Q92889 AL080243.2-201ENST00000418783 582 ntBASIC17.44■□□□□ 0.38
ERCC4Q92889 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.44■□□□□ 0.38
ERCC4Q92889 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
ERCC4Q92889 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.44■□□□□ 0.38
ERCC4Q92889 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.44■□□□□ 0.38
ERCC4Q92889 AP000344.2-201ENST00000512987 629 ntBASIC17.44■□□□□ 0.38
ERCC4Q92889 AC092865.5-201ENST00000545435 363 ntBASIC17.44■□□□□ 0.38
ERCC4Q92889 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms