Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AL583805.1-201ENST00000391389 531 ntBASIC20.42■□□□□ 0.86
NPHP3Q7Z494 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 AC010234.1-201ENST00000494599 870 ntBASIC20.42■□□□□ 0.86
NPHP3Q7Z494 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 NKILA-202ENST00000614771 2598 ntBASIC20.42■□□□□ 0.86
NPHP3Q7Z494 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 AL137783.1-201ENST00000623494 1896 ntBASIC20.42■□□□□ 0.86
NPHP3Q7Z494 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 AC006122.1-201ENST00000493323 440 ntBASIC20.41■□□□□ 0.86
NPHP3Q7Z494 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 AC093752.3-201ENST00000567343 901 ntBASIC20.41■□□□□ 0.86
NPHP3Q7Z494 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
NPHP3Q7Z494 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 AL627422.1-201ENST00000434104 580 ntBASIC20.4■□□□□ 0.86
NPHP3Q7Z494 AL157407.1-201ENST00000435784 904 ntBASIC20.4■□□□□ 0.86
NPHP3Q7Z494 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 MIR4522-201ENST00000584932 87 ntBASIC20.4■□□□□ 0.86
NPHP3Q7Z494 RPS15-202ENST00000585665 467 ntTSL 3 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 AC087392.5-201ENST00000612517 489 ntBASIC20.4■□□□□ 0.86
NPHP3Q7Z494 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 AC105137.3-201ENST00000617588 984 ntBASIC20.4■□□□□ 0.86
NPHP3Q7Z494 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP3Q7Z494 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP3Q7Z494 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP3Q7Z494 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC20.39■□□□□ 0.86
NPHP3Q7Z494 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP3Q7Z494 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP3Q7Z494 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 ALG3P1-201ENST00000508806 1114 ntBASIC20.39■□□□□ 0.85
NPHP3Q7Z494 TMCO5B-205ENST00000530020 894 ntBASIC20.39■□□□□ 0.85
NPHP3Q7Z494 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 AC092299.1-201ENST00000632679 757 ntBASIC20.39■□□□□ 0.85
NPHP3Q7Z494 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms