Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PPP4R4Q6NUP7 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 RBPMS2P1-201ENST00000437762 623 ntBASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 AC069335.1-201ENST00000489972 472 ntBASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 AL138918.1-201ENST00000568306 659 ntBASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 AC093028.1-201ENST00000622998 982 ntBASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.79□□□□□ -0.04
PPP4R4Q6NUP7 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AC015656.1-201ENST00000624209 3578 ntBASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 LINC01230-201ENST00000625222 3017 ntBASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 PMS2P2-201ENST00000425039 1128 ntBASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms