Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.17■□□□□ 0.02
SRP54P61011 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SRP54P61011 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SRP54P61011 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SRP54P61011 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SRP54P61011 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SRP54P61011 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SRP54P61011 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
SRP54P61011 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SRP54P61011 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SRP54P61011 KRT8P35-201ENST00000483942 1338 ntBASIC15.17■□□□□ 0.02
SRP54P61011 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.17■□□□□ 0.02
SRP54P61011 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SRP54P61011 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
SRP54P61011 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
SRP54P61011 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.16■□□□□ 0.02
SRP54P61011 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SRP54P61011 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.16■□□□□ 0.02
SRP54P61011 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.16■□□□□ 0.02
SRP54P61011 NUS1P3-201ENST00000423502 862 ntBASIC15.16■□□□□ 0.02
SRP54P61011 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.16■□□□□ 0.02
SRP54P61011 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.16■□□□□ 0.02
SRP54P61011 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.16■□□□□ 0.02
SRP54P61011 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.16■□□□□ 0.02
SRP54P61011 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.16■□□□□ 0.02
SRP54P61011 KRT90P-201ENST00000549264 1064 ntBASIC15.16■□□□□ 0.02
SRP54P61011 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.16■□□□□ 0.02
SRP54P61011 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.16■□□□□ 0.02
SRP54P61011 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 AC145423.3-201ENST00000615987 467 ntBASIC15.16■□□□□ 0.02
SRP54P61011 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
SRP54P61011 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 AC007950.2-201ENST00000615045 2347 ntBASIC15.16■□□□□ 0.02
SRP54P61011 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SRP54P61011 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SRP54P61011 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SRP54P61011 CICP13-201ENST00000422015 2789 ntBASIC15.15■□□□□ 0.02
SRP54P61011 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
SRP54P61011 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
SRP54P61011 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.15■□□□□ 0.02
SRP54P61011 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.15■□□□□ 0.02
SRP54P61011 AC114812.1-204ENST00000449669 728 ntBASIC15.15■□□□□ 0.02
SRP54P61011 AC004066.1-201ENST00000502488 802 ntBASIC15.15■□□□□ 0.02
SRP54P61011 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SRP54P61011 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.15■□□□□ 0.02
SRP54P61011 AC079316.1-201ENST00000548397 411 ntBASIC15.15■□□□□ 0.02
SRP54P61011 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.15■□□□□ 0.02
SRP54P61011 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 AC025279.2-201ENST00000569730 653 ntBASIC15.15■□□□□ 0.02
SRP54P61011 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.15■□□□□ 0.02
SRP54P61011 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 RHOXF1P1-202ENST00000635473 501 ntBASIC15.15■□□□□ 0.02
SRP54P61011 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.15■□□□□ 0.02
SRP54P61011 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms