Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
LIM2P55344 SOCS2P1-201ENST00000417727 557 ntBASIC14.55□□□□□ -0.08
LIM2P55344 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.55□□□□□ -0.08
LIM2P55344 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.55□□□□□ -0.08
LIM2P55344 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.55□□□□□ -0.08
LIM2P55344 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 AC025048.6-201ENST00000634326 1161 ntBASIC14.55□□□□□ -0.08
LIM2P55344 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.55□□□□□ -0.08
LIM2P55344 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LIM2P55344 KRT8P22-201ENST00000562317 1415 ntBASIC14.55□□□□□ -0.08
LIM2P55344 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 MROH4P-201ENST00000431302 1578 ntBASIC14.55□□□□□ -0.08
LIM2P55344 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.55□□□□□ -0.08
LIM2P55344 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
LIM2P55344 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.55□□□□□ -0.08
LIM2P55344 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LIM2P55344 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.54□□□□□ -0.08
LIM2P55344 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.54□□□□□ -0.08
LIM2P55344 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.54□□□□□ -0.08
LIM2P55344 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.54□□□□□ -0.08
LIM2P55344 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.54□□□□□ -0.08
LIM2P55344 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.54□□□□□ -0.08
LIM2P55344 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.54□□□□□ -0.08
LIM2P55344 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.54□□□□□ -0.08
LIM2P55344 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.54□□□□□ -0.08
LIM2P55344 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.54□□□□□ -0.08
LIM2P55344 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LIM2P55344 AC007787.1-201ENST00000588095 1583 ntBASIC14.54□□□□□ -0.08
LIM2P55344 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
LIM2P55344 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.54□□□□□ -0.08
LIM2P55344 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
LIM2P55344 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIM2P55344 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 REXO1L4P-201ENST00000605109 1937 ntBASIC14.53□□□□□ -0.08
LIM2P55344 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms