Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
CDX1P47902 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.64□□□□□ -0.39
CDX1P47902 TREML5P-201ENST00000421694 576 ntBASIC12.64□□□□□ -0.39
CDX1P47902 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC12.64□□□□□ -0.39
CDX1P47902 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC12.64□□□□□ -0.39
CDX1P47902 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12.64□□□□□ -0.39
CDX1P47902 AC097493.3-201ENST00000509725 367 ntBASIC12.64□□□□□ -0.39
CDX1P47902 AC093214.1-201ENST00000511688 1107 ntBASIC12.64□□□□□ -0.39
CDX1P47902 IGHV3-42-201ENST00000520410 361 ntBASIC12.64□□□□□ -0.39
CDX1P47902 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 LITAF-210ENST00000571976 548 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 LITAF-214ENST00000574703 486 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 AC092364.2-202ENST00000597012 1073 ntBASIC12.64□□□□□ -0.39
CDX1P47902 AC026979.3-201ENST00000607315 403 ntBASIC12.64□□□□□ -0.39
CDX1P47902 AL365330.1-201ENST00000607459 531 ntBASIC12.64□□□□□ -0.39
CDX1P47902 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC12.64□□□□□ -0.39
CDX1P47902 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.64□□□□□ -0.39
CDX1P47902 AC005622.1-201ENST00000636801 1703 ntBASIC12.64□□□□□ -0.39
CDX1P47902 FO538757.1-201ENST00000623083 1397 ntBASIC12.64□□□□□ -0.39
CDX1P47902 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 Z82170.1-201ENST00000625081 3192 ntBASIC12.64□□□□□ -0.39
CDX1P47902 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.64□□□□□ -0.39
CDX1P47902 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CDX1P47902 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CDX1P47902 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.64□□□□□ -0.39
CDX1P47902 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC12.63□□□□□ -0.39
CDX1P47902 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
CDX1P47902 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
CDX1P47902 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.63□□□□□ -0.39
CDX1P47902 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 AL512638.1-201ENST00000457493 794 ntBASIC12.63□□□□□ -0.39
CDX1P47902 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC12.63□□□□□ -0.39
CDX1P47902 INGX-202ENST00000489074 768 ntBASIC12.63□□□□□ -0.39
CDX1P47902 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC12.63□□□□□ -0.39
CDX1P47902 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.63□□□□□ -0.39
CDX1P47902 AL390955.2-201ENST00000603032 514 ntBASIC12.63□□□□□ -0.39
CDX1P47902 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.63□□□□□ -0.39
CDX1P47902 AJ011932.1-201ENST00000621707 465 ntBASIC12.63□□□□□ -0.39
CDX1P47902 AC073592.8-201ENST00000624126 511 ntBASIC12.63□□□□□ -0.39
CDX1P47902 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.63□□□□□ -0.39
CDX1P47902 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CDX1P47902 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC12.63□□□□□ -0.39
CDX1P47902 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.63□□□□□ -0.39
CDX1P47902 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.63□□□□□ -0.39
CDX1P47902 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDX1P47902 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
CDX1P47902 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms