Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.62□□□□□ -0.07
SDC1P18827 AC009407.1-201ENST00000568958 598 ntBASIC14.62□□□□□ -0.07
SDC1P18827 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.62□□□□□ -0.07
SDC1P18827 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.62□□□□□ -0.07
SDC1P18827 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 AC018442.1-201ENST00000421439 2061 ntBASIC14.62□□□□□ -0.07
SDC1P18827 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.62□□□□□ -0.07
SDC1P18827 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 INTS4P1-203ENST00000641008 3683 ntBASIC14.61□□□□□ -0.07
SDC1P18827 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SDC1P18827 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.61□□□□□ -0.07
SDC1P18827 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SDC1P18827 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
SDC1P18827 AC139749.1-202ENST00000617529 3139 ntBASIC14.61□□□□□ -0.07
SDC1P18827 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SDC1P18827 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.61□□□□□ -0.07
SDC1P18827 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.61□□□□□ -0.07
SDC1P18827 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.61□□□□□ -0.07
SDC1P18827 AL589987.1-201ENST00000453380 819 ntBASIC14.61□□□□□ -0.07
SDC1P18827 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.61□□□□□ -0.07
SDC1P18827 GAPDHP40-201ENST00000505218 1006 ntBASIC14.61□□□□□ -0.07
SDC1P18827 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.61□□□□□ -0.07
SDC1P18827 IGHV3-42-201ENST00000520410 361 ntBASIC14.61□□□□□ -0.07
SDC1P18827 DUX4L27-201ENST00000554796 1261 ntBASIC14.61□□□□□ -0.07
SDC1P18827 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.61□□□□□ -0.07
SDC1P18827 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.61□□□□□ -0.07
SDC1P18827 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 BTBD7P1-201ENST00000447253 1453 ntBASIC14.61□□□□□ -0.07
SDC1P18827 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.61□□□□□ -0.07
SDC1P18827 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
SDC1P18827 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.61□□□□□ -0.07
SDC1P18827 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.61□□□□□ -0.07
SDC1P18827 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.61□□□□□ -0.07
SDC1P18827 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
SDC1P18827 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDC1P18827 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.6□□□□□ -0.07
SDC1P18827 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.6□□□□□ -0.07
SDC1P18827 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SDC1P18827 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
SDC1P18827 AL161772.1-201ENST00000610494 4412 ntBASIC14.6□□□□□ -0.07
SDC1P18827 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.6□□□□□ -0.07
SDC1P18827 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.6□□□□□ -0.07
SDC1P18827 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.6□□□□□ -0.07
SDC1P18827 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.6□□□□□ -0.07
SDC1P18827 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.6□□□□□ -0.07
SDC1P18827 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
SDC1P18827 MEIS3P1-201ENST00000495167 958 ntBASIC14.6□□□□□ -0.07
SDC1P18827 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.6□□□□□ -0.07
SDC1P18827 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.6□□□□□ -0.07
SDC1P18827 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDC1P18827 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms