Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.5■□□□□ 0.07
VIMP08670 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.5■□□□□ 0.07
VIMP08670 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.5■□□□□ 0.07
VIMP08670 MIR3652-201ENST00000579335 131 ntBASIC15.5■□□□□ 0.07
VIMP08670 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.5■□□□□ 0.07
VIMP08670 AC011467.4-201ENST00000594891 528 ntBASIC15.5■□□□□ 0.07
VIMP08670 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.5■□□□□ 0.07
VIMP08670 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 DGCR9-201ENST00000609630 2415 ntBASIC15.5■□□□□ 0.07
VIMP08670 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.5■□□□□ 0.07
VIMP08670 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.5■□□□□ 0.07
VIMP08670 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 AC015802.1-201ENST00000588104 1449 ntBASIC15.5■□□□□ 0.07
VIMP08670 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.5■□□□□ 0.07
VIMP08670 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 GALC-206ENST00000544807 2528 ntTSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 AC018442.1-201ENST00000421439 2061 ntBASIC15.49■□□□□ 0.07
VIMP08670 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.49■□□□□ 0.07
VIMP08670 AC092474.2-201ENST00000424288 719 ntBASIC15.49■□□□□ 0.07
VIMP08670 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 AC093458.2-201ENST00000623150 629 ntBASIC15.49■□□□□ 0.07
VIMP08670 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VIMP08670 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC15.49■□□□□ 0.07
VIMP08670 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
VIMP08670 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VIMP08670 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
VIMP08670 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 AC099521.3-201ENST00000624251 2938 ntBASIC15.48■□□□□ 0.07
VIMP08670 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC15.48■□□□□ 0.07
VIMP08670 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
VIMP08670 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.48■□□□□ 0.07
VIMP08670 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.48■□□□□ 0.07
VIMP08670 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
VIMP08670 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.48■□□□□ 0.07
VIMP08670 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VIMP08670 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.48■□□□□ 0.07
VIMP08670 AC108073.2-201ENST00000464002 357 ntBASIC15.48■□□□□ 0.07
VIMP08670 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VIMP08670 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.48■□□□□ 0.07
VIMP08670 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.48■□□□□ 0.07
VIMP08670 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.48■□□□□ 0.07
VIMP08670 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC15.48■□□□□ 0.07
VIMP08670 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms