Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.36■□□□□ 0.05
SHOX2O60902 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.36■□□□□ 0.05
SHOX2O60902 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SHOX2O60902 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.36■□□□□ 0.05
SHOX2O60902 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
SHOX2O60902 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
SHOX2O60902 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.35■□□□□ 0.05
SHOX2O60902 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
SHOX2O60902 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.35■□□□□ 0.05
SHOX2O60902 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.35■□□□□ 0.05
SHOX2O60902 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.35■□□□□ 0.05
SHOX2O60902 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SHOX2O60902 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SHOX2O60902 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
SHOX2O60902 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.35■□□□□ 0.05
SHOX2O60902 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.35■□□□□ 0.05
SHOX2O60902 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.35■□□□□ 0.05
SHOX2O60902 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.35■□□□□ 0.05
SHOX2O60902 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.35■□□□□ 0.05
SHOX2O60902 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.35■□□□□ 0.05
SHOX2O60902 MIR3652-201ENST00000579335 131 ntBASIC15.35■□□□□ 0.05
SHOX2O60902 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.35■□□□□ 0.05
SHOX2O60902 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.35■□□□□ 0.05
SHOX2O60902 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SHOX2O60902 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SHOX2O60902 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC15.35■□□□□ 0.05
SHOX2O60902 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHOX2O60902 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
SHOX2O60902 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC15.34■□□□□ 0.05
SHOX2O60902 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
SHOX2O60902 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.34■□□□□ 0.05
SHOX2O60902 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
SHOX2O60902 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 UPK3BP1-201ENST00000428678 509 ntBASIC15.34■□□□□ 0.05
SHOX2O60902 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.34■□□□□ 0.05
SHOX2O60902 HCG4P8-203ENST00000443049 980 ntBASIC15.34■□□□□ 0.05
SHOX2O60902 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 AC006557.2-201ENST00000592985 1240 ntBASIC15.34■□□□□ 0.05
SHOX2O60902 AC025062.2-201ENST00000605477 670 ntBASIC15.34■□□□□ 0.05
SHOX2O60902 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
SHOX2O60902 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.34■□□□□ 0.05
SHOX2O60902 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.34■□□□□ 0.05
SHOX2O60902 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC15.34■□□□□ 0.05
SHOX2O60902 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHOX2O60902 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms