Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.71□□□□□ -0.05
PDLIM1O00151 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.71□□□□□ -0.05
PDLIM1O00151 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.71□□□□□ -0.05
PDLIM1O00151 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
PDLIM1O00151 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 ELL2P1-201ENST00000413990 1906 ntBASIC14.71□□□□□ -0.05
PDLIM1O00151 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.71□□□□□ -0.05
PDLIM1O00151 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.71□□□□□ -0.05
PDLIM1O00151 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 MIR1233-2-201ENST00000408138 82 ntBASIC14.71□□□□□ -0.05
PDLIM1O00151 MIR1233-1-201ENST00000408722 82 ntBASIC14.71□□□□□ -0.05
PDLIM1O00151 AC092474.2-201ENST00000424288 719 ntBASIC14.71□□□□□ -0.05
PDLIM1O00151 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 ADH5P3-201ENST00000433842 1137 ntBASIC14.71□□□□□ -0.05
PDLIM1O00151 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.71□□□□□ -0.05
PDLIM1O00151 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.71□□□□□ -0.05
PDLIM1O00151 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.71□□□□□ -0.05
PDLIM1O00151 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.71□□□□□ -0.05
PDLIM1O00151 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.71□□□□□ -0.05
PDLIM1O00151 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 AC139530.3-201ENST00000620344 690 ntBASIC14.71□□□□□ -0.05
PDLIM1O00151 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
PDLIM1O00151 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
PDLIM1O00151 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDLIM1O00151 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PDLIM1O00151 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PDLIM1O00151 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PDLIM1O00151 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PDLIM1O00151 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PDLIM1O00151 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.06
PDLIM1O00151 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.06
PDLIM1O00151 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.71□□□□□ -0.06
PDLIM1O00151 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.06
PDLIM1O00151 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
PDLIM1O00151 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PDLIM1O00151 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
PDLIM1O00151 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.7□□□□□ -0.06
PDLIM1O00151 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.7□□□□□ -0.06
PDLIM1O00151 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PDLIM1O00151 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
PDLIM1O00151 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.7□□□□□ -0.06
PDLIM1O00151 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.7□□□□□ -0.06
PDLIM1O00151 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.7□□□□□ -0.06
PDLIM1O00151 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.7□□□□□ -0.06
PDLIM1O00151 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.7□□□□□ -0.06
PDLIM1O00151 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.7□□□□□ -0.06
PDLIM1O00151 MIR4469-201ENST00000583919 79 ntBASIC14.7□□□□□ -0.06
PDLIM1O00151 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.7□□□□□ -0.06
PDLIM1O00151 AC083964.2-201ENST00000623988 2396 ntBASIC14.7□□□□□ -0.06
PDLIM1O00151 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.7□□□□□ -0.06
PDLIM1O00151 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
PDLIM1O00151 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PDLIM1O00151 AC073439.1-201ENST00000624121 1774 ntBASIC14.7□□□□□ -0.06
PDLIM1O00151 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDLIM1O00151 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PDLIM1O00151 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms