Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX2IPQ9Y2D8 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX2IPQ9Y2D8 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX2IPQ9Y2D8 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX2IPQ9Y2D8 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX2IPQ9Y2D8 PCDHA3-202ENST00000532566 4594 ntBASIC16.57■□□□□ 0.24
SSX2IPQ9Y2D8 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX2IPQ9Y2D8 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 AC025279.2-201ENST00000569730 653 ntBASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 AC244669.2-201ENST00000612320 853 ntBASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 AC132938.4-201ENST00000623835 848 ntBASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 MSTO2P-201ENST00000314835 1709 ntBASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX2IPQ9Y2D8 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 AC103810.3-201ENST00000583567 96 ntBASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 BX539320.1-201ENST00000623759 877 ntBASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX2IPQ9Y2D8 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms