Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 OR6D1P-203ENST00000641209 4860 ntBASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 C2orf27AP3-201ENST00000434123 579 ntBASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 AC245100.3-201ENST00000441281 285 ntBASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 RPS15-202ENST00000585665 467 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 AL354718.3-201ENST00000616414 581 ntBASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 CR382287.1-201ENST00000623954 586 ntBASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 POR-201ENST00000394893 2532 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM35Q9UPQ4 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 CSF2RBP1-201ENST00000447905 391 ntBASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 MIR6805-201ENST00000615055 62 ntBASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 RHOXF1P1-202ENST00000635473 501 ntBASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 AC006453.4-201ENST00000636949 1252 ntBASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 INE2-201ENST00000630399 1874 ntBASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM35Q9UPQ4 DBET-201ENST00000630918 3363 ntBASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms