Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 AC007787.1-201ENST00000588095 1583 ntBASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 ACE3P-201ENST00000423435 1973 ntBASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.94■□□□□ 0.14
AP4E1Q9UPM8 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 TERF1P3-201ENST00000505638 1227 ntBASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 AC092552.1-201ENST00000547243 906 ntBASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 AC093525.8-201ENST00000624099 1342 ntBASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
AP4E1Q9UPM8 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 PCDHA3-202ENST00000532566 4594 ntBASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
AP4E1Q9UPM8 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms