Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 AC092658.1-201ENST00000505836 891 ntBASIC14.97□□□□□ -0.01
VPS4AQ9UN37 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 AC009407.1-201ENST00000568958 598 ntBASIC14.97□□□□□ -0.01
VPS4AQ9UN37 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 AC132938.2-201ENST00000579188 680 ntBASIC14.97□□□□□ -0.01
VPS4AQ9UN37 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 TEX28P1-201ENST00000613479 1221 ntBASIC14.97□□□□□ -0.01
VPS4AQ9UN37 TEX28P2-201ENST00000617764 1221 ntBASIC14.97□□□□□ -0.01
VPS4AQ9UN37 AL591163.1-201ENST00000641757 987 ntBASIC14.97□□□□□ -0.01
VPS4AQ9UN37 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4AQ9UN37 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 CICP24-201ENST00000605464 2705 ntBASIC14.96□□□□□ -0.01
VPS4AQ9UN37 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 AC112492.5-201ENST00000421897 457 ntBASIC14.96□□□□□ -0.01
VPS4AQ9UN37 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 EEF1DP4-201ENST00000446006 880 ntBASIC14.96□□□□□ -0.01
VPS4AQ9UN37 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4AQ9UN37 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VPS4AQ9UN37 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 AC104581.4-201ENST00000623126 3052 ntBASIC14.95□□□□□ -0.02
VPS4AQ9UN37 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms