Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.19■□□□□ 0.34
COL20A1Q9P218 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL20A1Q9P218 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL20A1Q9P218 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL20A1Q9P218 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL20A1Q9P218 MROH4P-201ENST00000431302 1578 ntBASIC17.19■□□□□ 0.34
COL20A1Q9P218 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL20A1Q9P218 FKBP4P6-201ENST00000457486 1332 ntBASIC17.19■□□□□ 0.34
COL20A1Q9P218 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL20A1Q9P218 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL20A1Q9P218 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 LILRP1-201ENST00000444199 1370 ntBASIC17.18■□□□□ 0.34
COL20A1Q9P218 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 AC100850.1-201ENST00000506768 649 ntBASIC17.18■□□□□ 0.34
COL20A1Q9P218 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 ZACNP1-201ENST00000612259 710 ntBASIC17.18■□□□□ 0.34
COL20A1Q9P218 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 AP001002.3-201ENST00000623482 206 ntBASIC17.18■□□□□ 0.34
COL20A1Q9P218 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 AC020910.5-201ENST00000623668 1865 ntBASIC17.18■□□□□ 0.34
COL20A1Q9P218 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL20A1Q9P218 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.18■□□□□ 0.34
COL20A1Q9P218 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.17■□□□□ 0.34
COL20A1Q9P218 AC004945.1-201ENST00000416738 983 ntBASIC17.17■□□□□ 0.34
COL20A1Q9P218 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL20A1Q9P218 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.17■□□□□ 0.34
COL20A1Q9P218 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 AP000593.2-201ENST00000542775 1433 ntBASIC17.16■□□□□ 0.34
COL20A1Q9P218 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms