Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CUEDC1Q9NWM3 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CUEDC1Q9NWM3 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.91□□□□□ -0.02
CUEDC1Q9NWM3 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 AC092552.1-201ENST00000547243 906 ntBASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 CTBP2P3-201ENST00000585629 1255 ntBASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 AC107373.2-201ENST00000607735 490 ntBASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 IGHV3-72-202ENST00000621503 303 ntBASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 DRD5P1-201ENST00000456605 1438 ntBASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 AC006486.2-201ENST00000624246 2199 ntBASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CUEDC1Q9NWM3 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC126365.1-201ENST00000578585 1514 ntBASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 MIR658-201ENST00000385210 100 ntBASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 DGCR5-201ENST00000399539 862 ntBASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC079776.1-201ENST00000401540 1152 ntBASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 GAPDHP40-201ENST00000505218 1006 ntBASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 KRT17P8-201ENST00000540749 863 ntBASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CUEDC1Q9NWM3 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms