Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 AL591424.1-201ENST00000442569 1213 ntBASIC15.23■□□□□ 0.03
SSU72Q9NP77 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 SAMD11P1-201ENST00000571429 661 ntBASIC15.23■□□□□ 0.03
SSU72Q9NP77 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 KRT8P22-201ENST00000562317 1415 ntBASIC15.23■□□□□ 0.03
SSU72Q9NP77 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SSU72Q9NP77 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.23■□□□□ 0.03
SSU72Q9NP77 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 AL360270.3-201ENST00000609118 1348 ntBASIC15.22■□□□□ 0.03
SSU72Q9NP77 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 AC016397.2-201ENST00000624848 1985 ntBASIC15.22■□□□□ 0.03
SSU72Q9NP77 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 AC015656.1-201ENST00000624209 3578 ntBASIC15.22■□□□□ 0.03
SSU72Q9NP77 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 MIR1224-201ENST00000408193 85 ntBASIC15.22■□□□□ 0.03
SSU72Q9NP77 KRT18P64-201ENST00000434946 1219 ntBASIC15.22■□□□□ 0.03
SSU72Q9NP77 ACTG1P14-201ENST00000446382 1122 ntBASIC15.22■□□□□ 0.03
SSU72Q9NP77 KRT18P43-201ENST00000469825 1281 ntBASIC15.22■□□□□ 0.03
SSU72Q9NP77 TMEM198B-204ENST00000484016 896 ntBASIC15.22■□□□□ 0.03
SSU72Q9NP77 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 AC018529.1-201ENST00000613063 361 ntBASIC15.22■□□□□ 0.03
SSU72Q9NP77 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SSU72Q9NP77 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.22■□□□□ 0.03
SSU72Q9NP77 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SSU72Q9NP77 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
SSU72Q9NP77 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SSU72Q9NP77 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SSU72Q9NP77 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SSU72Q9NP77 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SSU72Q9NP77 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.21■□□□□ 0.03
SSU72Q9NP77 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms