Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19.72■□□□□ 0.75
ABCA3Q99758 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
ABCA3Q99758 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
ABCA3Q99758 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC19.72■□□□□ 0.75
ABCA3Q99758 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC19.71■□□□□ 0.75
ABCA3Q99758 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
ABCA3Q99758 ST13P19-201ENST00000442505 1124 ntBASIC19.71■□□□□ 0.75
ABCA3Q99758 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 RHEB-207ENST00000496004 744 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 AP000322.3-201ENST00000608665 388 ntBASIC19.71■□□□□ 0.75
ABCA3Q99758 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA3Q99758 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA3Q99758 AP001527.2-201ENST00000614441 631 ntBASIC19.71■□□□□ 0.75
ABCA3Q99758 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC19.71■□□□□ 0.75
ABCA3Q99758 AL662844.4-201ENST00000606367 2838 ntBASIC19.71■□□□□ 0.75
ABCA3Q99758 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.7■□□□□ 0.74
ABCA3Q99758 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ABCA3Q99758 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC19.7■□□□□ 0.74
ABCA3Q99758 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ABCA3Q99758 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC19.7■□□□□ 0.74
ABCA3Q99758 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC19.7■□□□□ 0.74
ABCA3Q99758 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
ABCA3Q99758 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC19.7■□□□□ 0.74
ABCA3Q99758 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
ABCA3Q99758 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC19.7■□□□□ 0.74
ABCA3Q99758 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC19.7■□□□□ 0.74
ABCA3Q99758 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC19.7■□□□□ 0.74
ABCA3Q99758 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC19.7■□□□□ 0.74
ABCA3Q99758 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC19.7■□□□□ 0.74
ABCA3Q99758 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC19.7■□□□□ 0.74
ABCA3Q99758 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC19.7■□□□□ 0.74
ABCA3Q99758 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC19.7■□□□□ 0.74
ABCA3Q99758 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
ABCA3Q99758 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ABCA3Q99758 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
ABCA3Q99758 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.69■□□□□ 0.74
ABCA3Q99758 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
ABCA3Q99758 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
ABCA3Q99758 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.69■□□□□ 0.74
ABCA3Q99758 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC19.69■□□□□ 0.74
ABCA3Q99758 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
ABCA3Q99758 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
ABCA3Q99758 CELP-201ENST00000411440 1249 ntTSL 5 BASIC19.69■□□□□ 0.74
ABCA3Q99758 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC19.69■□□□□ 0.74
ABCA3Q99758 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC19.69■□□□□ 0.74
ABCA3Q99758 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
ABCA3Q99758 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
ABCA3Q99758 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA3Q99758 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA3Q99758 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.68■□□□□ 0.74
ABCA3Q99758 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA3Q99758 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA3Q99758 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
ABCA3Q99758 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
ABCA3Q99758 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC19.68■□□□□ 0.74
ABCA3Q99758 HNRNPA1P27-201ENST00000412087 955 ntBASIC19.68■□□□□ 0.74
ABCA3Q99758 AC092580.1-201ENST00000433998 658 ntBASIC19.68■□□□□ 0.74
ABCA3Q99758 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC19.68■□□□□ 0.74
ABCA3Q99758 AREG-202ENST00000502307 956 ntTSL 5 BASIC19.68■□□□□ 0.74
ABCA3Q99758 ELP5-212ENST00000574255 671 ntTSL 2 BASIC19.68■□□□□ 0.74
ABCA3Q99758 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC19.68■□□□□ 0.74
ABCA3Q99758 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ABCA3Q99758 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC19.68■□□□□ 0.74
ABCA3Q99758 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC19.68■□□□□ 0.74
ABCA3Q99758 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
ABCA3Q99758 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA3Q99758 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.68■□□□□ 0.74
ABCA3Q99758 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA3Q99758 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.68■□□□□ 0.74
ABCA3Q99758 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
ABCA3Q99758 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.68■□□□□ 0.74
ABCA3Q99758 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.68■□□□□ 0.74
ABCA3Q99758 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA3Q99758 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms