Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
USP28Q96RU2 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
USP28Q96RU2 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.55■□□□□ 0.4
USP28Q96RU2 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.55■□□□□ 0.4
USP28Q96RU2 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
USP28Q96RU2 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.55■□□□□ 0.4
USP28Q96RU2 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
USP28Q96RU2 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.55■□□□□ 0.4
USP28Q96RU2 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.55■□□□□ 0.4
USP28Q96RU2 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.55■□□□□ 0.4
USP28Q96RU2 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.55■□□□□ 0.4
USP28Q96RU2 AC241585.1-201ENST00000433527 519 ntBASIC17.55■□□□□ 0.4
USP28Q96RU2 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.55■□□□□ 0.4
USP28Q96RU2 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.55■□□□□ 0.4
USP28Q96RU2 TIMM17BP1-201ENST00000545713 516 ntBASIC17.55■□□□□ 0.4
USP28Q96RU2 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.55■□□□□ 0.4
USP28Q96RU2 AC004790.1-201ENST00000612686 536 ntBASIC17.55■□□□□ 0.4
USP28Q96RU2 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC17.55■□□□□ 0.4
USP28Q96RU2 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.55■□□□□ 0.4
USP28Q96RU2 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.55■□□□□ 0.4
USP28Q96RU2 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP28Q96RU2 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.54■□□□□ 0.4
USP28Q96RU2 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
USP28Q96RU2 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
USP28Q96RU2 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
USP28Q96RU2 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.54■□□□□ 0.4
USP28Q96RU2 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 AC008738.7-201ENST00000609744 511 ntBASIC17.54■□□□□ 0.4
USP28Q96RU2 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.54■□□□□ 0.4
USP28Q96RU2 AC004840.1-201ENST00000636359 365 ntBASIC17.54■□□□□ 0.4
USP28Q96RU2 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
USP28Q96RU2 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC17.54■□□□□ 0.4
USP28Q96RU2 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 AP001267.2-201ENST00000532619 2086 ntBASIC17.54■□□□□ 0.4
USP28Q96RU2 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
USP28Q96RU2 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.54■□□□□ 0.4
USP28Q96RU2 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP28Q96RU2 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC17.54■□□□□ 0.4
USP28Q96RU2 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.53■□□□□ 0.4
USP28Q96RU2 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.53■□□□□ 0.4
USP28Q96RU2 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.53■□□□□ 0.4
USP28Q96RU2 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 AC117489.1-201ENST00000625169 3217 ntBASIC17.53■□□□□ 0.4
USP28Q96RU2 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
USP28Q96RU2 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.53■□□□□ 0.4
USP28Q96RU2 AL360270.3-201ENST00000609118 1348 ntBASIC17.53■□□□□ 0.4
USP28Q96RU2 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
USP28Q96RU2 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
USP28Q96RU2 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.53■□□□□ 0.4
USP28Q96RU2 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.53■□□□□ 0.4
USP28Q96RU2 MEIS3P1-201ENST00000495167 958 ntBASIC17.53■□□□□ 0.4
USP28Q96RU2 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.53■□□□□ 0.4
USP28Q96RU2 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.53■□□□□ 0.4
USP28Q96RU2 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.53■□□□□ 0.4
USP28Q96RU2 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.53■□□□□ 0.4
USP28Q96RU2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.53■□□□□ 0.4
USP28Q96RU2 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms