Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL133267.1-201ENST00000398220 340 ntBASIC16.62■□□□□ 0.25
CCDC42Q96M95 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 AL627223.1-201ENST00000416693 442 ntBASIC16.62■□□□□ 0.25
CCDC42Q96M95 AC074338.1-201ENST00000416825 156 ntBASIC16.62■□□□□ 0.25
CCDC42Q96M95 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 POLD2P1-201ENST00000511220 997 ntBASIC16.62■□□□□ 0.25
CCDC42Q96M95 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 AC005829.1-201ENST00000570002 483 ntBASIC16.62■□□□□ 0.25
CCDC42Q96M95 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 MIR6069-201ENST00000620069 79 ntBASIC16.62■□□□□ 0.25
CCDC42Q96M95 AL513210.1-201ENST00000629608 234 ntBASIC16.62■□□□□ 0.25
CCDC42Q96M95 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 REXO1L4P-201ENST00000605109 1937 ntBASIC16.61■□□□□ 0.25
CCDC42Q96M95 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 AL079307.3-201ENST00000556114 283 ntBASIC16.61■□□□□ 0.25
CCDC42Q96M95 AC026150.2-201ENST00000564693 1156 ntBASIC16.61■□□□□ 0.25
CCDC42Q96M95 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 AL121894.2-201ENST00000602977 491 ntBASIC16.61■□□□□ 0.25
CCDC42Q96M95 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC42Q96M95 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC42Q96M95 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CCDC42Q96M95 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC42Q96M95 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms