Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM47Q96LD4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 NUS1P3-201ENST00000423502 862 ntBASIC17.96■□□□□ 0.47
TRIM47Q96LD4 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 HOMER2P2-201ENST00000451621 847 ntBASIC17.96■□□□□ 0.47
TRIM47Q96LD4 MPRIPP1-201ENST00000452433 1089 ntBASIC17.96■□□□□ 0.47
TRIM47Q96LD4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 AP001582.1-201ENST00000525856 295 ntBASIC17.96■□□□□ 0.47
TRIM47Q96LD4 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 AL121723.1-201ENST00000445194 1519 ntBASIC17.96■□□□□ 0.47
TRIM47Q96LD4 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
TRIM47Q96LD4 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TRIM47Q96LD4 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC17.96■□□□□ 0.46
TRIM47Q96LD4 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TRIM47Q96LD4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TRIM47Q96LD4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.95■□□□□ 0.46
TRIM47Q96LD4 HINT2P1-201ENST00000419438 481 ntBASIC17.95■□□□□ 0.46
TRIM47Q96LD4 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 MIR4722-201ENST00000578292 60 ntBASIC17.95■□□□□ 0.46
TRIM47Q96LD4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 AC093813.1-201ENST00000605066 256 ntBASIC17.95■□□□□ 0.46
TRIM47Q96LD4 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM47Q96LD4 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 AC018735.1-201ENST00000437208 1502 ntBASIC17.94■□□□□ 0.46
TRIM47Q96LD4 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 AL138709.1-201ENST00000614840 1693 ntBASIC17.94■□□□□ 0.46
TRIM47Q96LD4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.94■□□□□ 0.46
TRIM47Q96LD4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 MIR1202-201ENST00000408529 83 ntBASIC17.94■□□□□ 0.46
TRIM47Q96LD4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM47Q96LD4 AC136604.1-201ENST00000418535 575 ntBASIC17.94■□□□□ 0.46
TRIM47Q96LD4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms