Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 AC127383.1-201ENST00000444697 1800 ntBASIC15.35■□□□□ 0.05
HMGB4Q8WW32 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB4Q8WW32 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 AC022616.1-201ENST00000518688 554 ntBASIC15.34■□□□□ 0.05
HMGB4Q8WW32 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 SAMD11P1-201ENST00000571429 661 ntBASIC15.34■□□□□ 0.05
HMGB4Q8WW32 RN7SL713P-201ENST00000582127 302 ntBASIC15.34■□□□□ 0.05
HMGB4Q8WW32 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 NDUFV2P1-201ENST00000596415 907 ntBASIC15.34■□□□□ 0.05
HMGB4Q8WW32 DIO1-215ENST00000610607 796 ntTSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB4Q8WW32 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HMGB4Q8WW32 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.33■□□□□ 0.05
HMGB4Q8WW32 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
HMGB4Q8WW32 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.05
HMGB4Q8WW32 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HMGB4Q8WW32 LINC00554-201ENST00000564841 3011 ntBASIC15.33■□□□□ 0.05
HMGB4Q8WW32 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.33■□□□□ 0.05
HMGB4Q8WW32 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HMGB4Q8WW32 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.33■□□□□ 0.05
HMGB4Q8WW32 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
HMGB4Q8WW32 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 AC068418.2-201ENST00000577309 3703 ntBASIC15.33■□□□□ 0.04
HMGB4Q8WW32 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 EIF4HP1-201ENST00000453115 687 ntBASIC15.33■□□□□ 0.04
HMGB4Q8WW32 ATP6V0CP2-201ENST00000469409 207 ntBASIC15.33■□□□□ 0.04
HMGB4Q8WW32 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms