Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 MIR663B-201ENST00000408361 115 ntBASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 MPRIPP1-201ENST00000452433 1089 ntBASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 OARD1-212ENST00000482515 832 ntTSL 2 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AP001063.1-201ENST00000568332 529 ntBASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AC016629.1-201ENST00000596579 586 ntBASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AC008687.7-202ENST00000637404 953 ntBASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 TCAF2P1-201ENST00000291129 2421 ntBASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 AL138709.1-201ENST00000614840 1693 ntBASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.05■□□□□ 0.48
NKX2-3Q8TAU0 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 AC134312.5-201ENST00000568031 1313 ntBASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 BAATP1-201ENST00000412284 1225 ntBASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 FTH1P14-201ENST00000482930 551 ntBASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 BX539320.1-201ENST00000623759 877 ntBASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX2-3Q8TAU0 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 NEU3-202ENST00000526068 431 ntTSL 2 BASIC18.03■□□□□ 0.48
NKX2-3Q8TAU0 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms