Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AL031985.4-201ENST00000642138 673 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AC111170.3-201ENST00000624282 2464 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CCT7P1-201ENST00000406551 1611 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 TGM7-201ENST00000452443 2313 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 GPRASP1-201ENST00000361600 5971 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AC090505.1-201ENST00000430515 1834 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CEP68-201ENST00000260569 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CACNG3-201ENST00000005284 3088 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 MVP-202ENST00000395353 2925 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AL031719.1-201ENST00000623365 2587 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 PNPLA8-206ENST00000436062 3462 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AL445209.1-201ENST00000607269 3491 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 TNK1-201ENST00000570896 3122 ntAPPRIS P3 TSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 HARS-207ENST00000504156 3334 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CPPED1-202ENST00000381774 6273 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 UBTFL8-201ENST00000426903 2112 ntBASIC9.5□□□□□ -0.89
LINC00643Q86TS7 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 MYO1D-202ENST00000394649 5451 ntTSL 5 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 NBPF12-208ENST00000617931 7061 ntAPPRIS P2 TSL 5 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 PNMA5-204ENST00000452693 3113 ntAPPRIS P2 TSL 2 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 KDM5B-203ENST00000367265 10345 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 WBP1L-202ENST00000448841 4085 ntAPPRIS ALT1 TSL 2 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 ZNF148-205ENST00000484491 2952 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 OCA2-202ENST00000354638 3186 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 DLGAP1-212ENST00000515196 5314 ntTSL 2 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 P2RY8-201ENST00000381297 4198 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 PALLD-209ENST00000507735 4379 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 SPTB-202ENST00000389720 6321 ntTSL 5 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 BX276092.2-201ENST00000417668 665 ntBASIC9.5□□□□□ -0.89
LINC00643Q86TS7 KSR1P1-201ENST00000446298 240 ntBASIC9.5□□□□□ -0.89
LINC00643Q86TS7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 AC122714.2-201ENST00000502787 707 ntBASIC9.5□□□□□ -0.89
LINC00643Q86TS7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 SYDE1-203ENST00000600252 3832 ntTSL 2 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 AC110285.6-201ENST00000617652 491 ntBASIC9.5□□□□□ -0.89
LINC00643Q86TS7 AC231657.2-201ENST00000624556 255 ntBASIC9.5□□□□□ -0.89
LINC00643Q86TS7 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 PPIL2-201ENST00000335025 4929 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 BRWD1-204ENST00000380800 7605 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 BX537318.2-201ENST00000624893 4162 ntBASIC9.5□□□□□ -0.89
LINC00643Q86TS7 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 AC112176.1-201ENST00000565428 3024 ntBASIC9.5□□□□□ -0.89
LINC00643Q86TS7 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 AC096733.2-201ENST00000609937 1394 ntBASIC9.5□□□□□ -0.89
LINC00643Q86TS7 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 HDAC2-205ENST00000519065 9874 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
LINC00643Q86TS7 AC027369.3-201ENST00000530465 3707 ntBASIC9.49□□□□□ -0.89
LINC00643Q86TS7 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
LINC00643Q86TS7 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC9.49□□□□□ -0.89
LINC00643Q86TS7 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC9.49□□□□□ -0.89
LINC00643Q86TS7 AC011498.7-201ENST00000624986 2027 ntBASIC9.49□□□□□ -0.89
LINC00643Q86TS7 TMEM134-201ENST00000308022 3534 ntAPPRIS P1 TSL 2 BASIC9.49□□□□□ -0.89
LINC00643Q86TS7 PAM-203ENST00000346918 3302 ntTSL 5 BASIC9.49□□□□□ -0.89
LINC00643Q86TS7 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC9.49□□□□□ -0.89
LINC00643Q86TS7 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
LINC00643Q86TS7 PLEC-202ENST00000345136 14803 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms